Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,201,845 – 2,201,938 |
Length | 93 |
Max. P | 0.625403 |
Location | 2,201,845 – 2,201,938 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 70.53 |
Mean single sequence MFE | -34.15 |
Consensus MFE | -16.22 |
Energy contribution | -14.50 |
Covariance contribution | -1.72 |
Combinations/Pair | 1.60 |
Mean z-score | -1.62 |
Structure conservation index | 0.47 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.625403 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2201845 93 + 22224390 GACAGUGGGCUUGAGUUUGACCUGCA----GGCU--CACCGGCUUAGUUUCUGGCUCCUGGAGCUUUACCUCCACUUUGGUGGACUUCAGAGCGACGUA ((.(.((((((((((((((.....))----))))--))..)))))).).))..((((.(((((.((((((........)))))))))))))))...... ( -33.60) >DroPse_CAF1 190 92 + 1 GCUUGUGGAUCGCAGCUUCACCUGGAACUUGGCUGUCUGCGGCUGUGCCUCAGGCUUUUGGAGCUUCAGCUCCACCAUGCUGGUCA-------CUUGGU (((.((((....((((....(((((..(.((((((....)))))).)..)))))....((((((....))))))....)))).)))-------)..))) ( -31.20) >DroSec_CAF1 157 93 + 1 GGCAAUGGGCUUGAGUUUGACCUGCA----GGCU--CACCGGCUCAGAUUCCGGCUCCUGGAGUUUCAGCUCCACUUUGGUGGACUUCAGAGCGACGUU ((...((((((((((((((.....))----))))--))..))))))....)).((((.(((((.......(((((....))))))))))))))...... ( -34.11) >DroEre_CAF1 175 93 + 1 GGGUGUGGGCUUAAGUUUGACCUGCA----GGCU--CAUCGGCUUAGUCUCCGGCUCCUGGAGCUUUAGCUCCACCUUGGUGGACUUCAAAGCCACGCU .(((((((((((.((......))..)----))))--)...((((((((((((((....((((((....))))))..)))).)))))...)))))))))) ( -35.20) >DroYak_CAF1 172 93 + 1 CAAUGUGGGCUUGAGUUUGACCUGCA----GGCU--CACCGGCUUGGUUUCCGGCUCCUGGAGCUUUAGCUCCACUUUGGUGGAUCUUAAGGCCACGUU .(((((((.((((((.((.(((..((----((((--....))))))............((((((....))))))....))).)).)))))).))))))) ( -39.20) >DroPer_CAF1 190 92 + 1 GCUUGUGGAUCGCAGCUUCACCUGGAACUUGGCUGUCUGUGGCUGUGCCUCAGGCUUUUGGAGCUUCAGCUCCACCAUGCUGGUCA-------CUUGGU (((((.((..(((((((.((((........)).)).....))))))))).)))))....(((((....)))))((((.........-------..)))) ( -31.60) >consensus GACUGUGGGCUUGAGUUUGACCUGCA____GGCU__CACCGGCUUAGUCUCCGGCUCCUGGAGCUUCAGCUCCACCUUGGUGGACUUCA_AGCCACGUU ......(((.((((((..(....((......)).....)..)))))).))).......((((((....))))))((.....))................ (-16.22 = -14.50 + -1.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:58 2006