Locus 7948

Sequence ID X_DroMel_CAF1
Location 19,822,947 – 19,823,045
Length 98
Max. P 0.978410
window13040

overview

Window 0

Location 19,822,947 – 19,823,045
Length 98
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 91.53
Mean single sequence MFE -31.06
Consensus MFE -24.16
Energy contribution -24.72
Covariance contribution 0.56
Combinations/Pair 1.03
Mean z-score -2.62
Structure conservation index 0.78
SVM decision value 1.81
SVM RNA-class probability 0.978410
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19822947 98 - 22224390
CUGACCUGGCAGCAGCUUGCCAAAUGUAAUUCAUUAAAUUAAUGAAAUUGCACAGCACACAAAGCGAAAAAGGAGUGGUGGGCGUGGUCGGGCAUGAA-----
.((.((((((.((.(((..(((..((((((((((((...))))).)))))))..((.......))..........)))..))))).))))))))....----- ( -30.90)
>DroSec_CAF1 28828 97 - 1
CCGACCUGGCAGCAGC-UGCCAAAUGUAAUUCAUUAAAUUAAUGAAAUUGCACAGCACACAAAGCGAAAAAGGAGUGGUGGGCGUGGUCGGGCAUGAG-----
((((((((((((...)-)))))..((((((((((((...))))).)))))))..((.(((...((.........)).))).))..)))))).......----- ( -31.70)
>DroSim_CAF1 26491 97 - 1
CCGACCUGGCAGCAGC-UGCCAAAUGUAAUUCAUUAAAUUAAUGAAAUUGCACAGCACACAAAGCGAAAAAGGAGUGGUGGGCGUGGUCGGGCAUGAG-----
((((((((((((...)-)))))..((((((((((((...))))).)))))))..((.(((...((.........)).))).))..)))))).......----- ( -31.70)
>DroEre_CAF1 19245 100 - 1
CUGUCCUGGCAGCAGC-UGCCAAAUGUAAUUCAUUAAAUUAAUGAAAUUGCACAGCACACAAAGCGAAAUGGGAUUGGUGGGCGUGGUCGGGAACGACGGC--
..((((((((((...)-)))))..((((((((((((...))))).)))))))..((.......))..............))))((.((((....)))).))-- ( -29.50)
>DroYak_CAF1 19676 102 - 1
CUGUCCUGGCAGCAGC-UGCCCAAUGUAAUUCAUUAAAUUAAUGAAAUUGCACAGCACACAAAGCGAAAAAGGAGUAGUGGGCGUGGUCGGGAAUAAAGGGGU
((.(((((((.((.((-(((((..((((((((((((...))))).)))))))..((.......))......)).)))))..))...)))))))....)).... ( -31.50)
>consensus
CUGACCUGGCAGCAGC_UGCCAAAUGUAAUUCAUUAAAUUAAUGAAAUUGCACAGCACACAAAGCGAAAAAGGAGUGGUGGGCGUGGUCGGGCAUGAA_____
(((((((((((......)))))..((((((((((((...))))).)))))))..((.(((...((.........)).))).))..))))))............ (-24.16 = -24.72 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:29 2006