| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,821,536 – 19,821,633 |
| Length | 97 |
| Max. P | 0.637517 |
| Location | 19,821,536 – 19,821,633 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 79.21 |
| Mean single sequence MFE | -27.07 |
| Consensus MFE | -17.35 |
| Energy contribution | -17.02 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.637517 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19821536 97 - 22224390 UAUGUAUGUACAUACAAACAUGCAUGUGAGAGUGUGUAAGUGUG----UGUGCCAGUGUGUGUUAAAACUGCAAGAGCAACAGCGCGUGUUUGCUCAUAAU .......(((((((((....((((..(....)..))))..))))----)))))((((..........))))...((((((((.....)).))))))..... ( -27.30) >DroSec_CAF1 27439 101 - 1 UAUGUACAUACAUCCAUACAUGUGUGUGCCAGUAUGCGAGUGUGUAAGUGCGCCAGUGUGUGUUAAAACUGCAGGAGCAACAGCGCGAGUUUGCUCAUAAU ...((((((((((......)))))))))).....(((.(((...(.((..(((....)))..)).).)))))).((((((..((....))))))))..... ( -29.80) >DroSim_CAF1 25320 85 - 1 UAUGUACAUACAUCCAUACAUGUGU----------------GUGUAAGUGCGCCAGUGUGUGUUAAAACUGCAGGAGCAACAGCGCGAGUUUGCUCAUAAU ...((((.((((..(((....))).----------------.)))).))))((.(((..........)))))..((((((..((....))))))))..... ( -24.10) >consensus UAUGUACAUACAUCCAUACAUGUGUGUG__AGU_UG__AGUGUGUAAGUGCGCCAGUGUGUGUUAAAACUGCAGGAGCAACAGCGCGAGUUUGCUCAUAAU ..((((........(((((((((((........................))))..))))))).......)))).((((((..((....))))))))..... (-17.35 = -17.02 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:28 2006