Locus 7945

Sequence ID X_DroMel_CAF1
Location 19,821,177 – 19,821,295
Length 118
Max. P 0.520921
window13037

overview

Window 7

Location 19,821,177 – 19,821,295
Length 118
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 94.24
Mean single sequence MFE -37.06
Consensus MFE -32.42
Energy contribution -33.10
Covariance contribution 0.68
Combinations/Pair 1.06
Mean z-score -1.17
Structure conservation index 0.87
SVM decision value -0.02
SVM RNA-class probability 0.520921
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19821177 118 - 22224390
UGCGAUGCACGCAGGACAUCAAGCGAUCCAAGGAUUCGCACACUGAGAAAAUGAGCGAAGGGUGUCAAAGGUCAUCGCGGCAGUUUAUCAAUCUCAGUGCUUGUGAACGGAUUUCGCU
.((((..(.((((((.......((((((....)).)))).((((((((..((((((...(((((.(....).)))).)....))))))...))))))))))))))....)...)))). ( -38.10)
>DroSec_CAF1 27112 118 - 1
UGCGAUGCACGCAGGACAUCAAGCGAUCCAAGGAUGCGCACACUGAGAAAAUGAGCGAGGGGUGUCAAAGGUCAUCGCCGCAGUUUAUCAAUCUCAGUGCUUGAGUACGGAUUUCGCU
.((((....((....((.((((((((((....))).))).((((((((..((((((..((((((.(....).)))).))...))))))...)))))))).)))))).))....)))). ( -39.80)
>DroSim_CAF1 24993 118 - 1
UGCGAUGCACGCAGGACAUCAAGCGAUCCAAGGAUUCGCACACUGAGAAAAUGAGCGAGGGGUGUCAAAGGUCAUCGCCGCAGUUUAUCAAUCUCAGUGCUUGAGUACGGAUUUCGCU
.((((....((....((.((((((((((....)).)))).((((((((..((((((..((((((.(....).)))).))...))))))...)))))))).)))))).))....)))). ( -39.80)
>DroEre_CAF1 17449 115 - 1
UGCGAUGCACGCAGGACAUCAAGCGAUCCAAGGAUUCGCACACUGAAAAAAUGAGCGAGGGGUGUCAAAGGUCAUCGCCGCUGUUUGUCAAUCUCAGUGCUUGAGAACU---UUUGCU
..........((((((..((((((((((....)).)))).((((((..((((.((((.(.((((.(....).)))).))))))))).......)))))).))))....)---))))). ( -32.00)
>DroYak_CAF1 17930 118 - 1
UGCGAUGCACGCAGGACAUCAAGCGAUCCAAGGAUUCGCACACUGAGAAAAUGAGCGAGGGGUGUCAAAGGUCAGCGCCACAGUUUAUCAAUCGCAGUGCUUGAGAACUGAUUUCGCU
.((((......(((..(.((((((((((....)).)))).(((((.((..((((((....(((((.........)))))...))))))...)).))))).)))))..)))...)))). ( -35.60)
>consensus
UGCGAUGCACGCAGGACAUCAAGCGAUCCAAGGAUUCGCACACUGAGAAAAUGAGCGAGGGGUGUCAAAGGUCAUCGCCGCAGUUUAUCAAUCUCAGUGCUUGAGAACGGAUUUCGCU
.((((..(...((((.......((((((....))).))).((((((((..((((((..((((((.(....).)))).))...))))))...))))))))))))......)...)))). (-32.42 = -33.10 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:27 2006