Locus 7944

Sequence ID X_DroMel_CAF1
Location 19,820,873 – 19,820,993
Length 120
Max. P 0.651121
window13036

overview

Window 6

Location 19,820,873 – 19,820,993
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 88.11
Mean single sequence MFE -24.22
Consensus MFE -16.28
Energy contribution -16.40
Covariance contribution 0.12
Combinations/Pair 1.14
Mean z-score -2.27
Structure conservation index 0.67
SVM decision value 0.25
SVM RNA-class probability 0.651121
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19820873 120 + 22224390
AACCAAGCAAAAACAAAAGGCUGCAAUCACAGAAUUGAUGUCAGUUCCGCACACGAACGAGAUGCUCUUAAAUAAAUCUCGUAUCGAAAUCAAUGCUGUCGAAAGCCCAAAAAGAGAAAA
..................((((....((((((.((((((.((.((.....))..(((((((((............))))))).)))).)))))).)))).)).))))............. ( -25.30)
>DroSec_CAF1 26691 117 + 1
AACCAAGCAAAAACAAAAGGCUGCAAUCACAGAAUUGAUGUCAGUUCCA--CACGAACGAGAUGCACUUAAAUAAAUCUCGUAUCGAAGUCUGCGCUGUUGAAAUCUUAAAAAUA-ACAA
.............(((..(((.(((..(...((((((....))))))..--..((((((((((............))))))).)))..)..)))))).)))..............-.... ( -23.00)
>DroSim_CAF1 23478 119 + 1
AACCAAGCAAAAACAAAAGGCUGCAAUCACAGAAUUGAUGUCAGUUCCGCGCACGAACGAGAUGCACUUAAAUAAAUCUCGUAUUGAAAUCUGCGCUGUUGAAAUUUUAAAAAUA-AAAA
......(((............)))..(((((((((((....)))))).(((((((((((((((............))))))).))).....))))))).))).............-.... ( -22.90)
>DroEre_CAF1 17070 119 + 1
AACCGAGCAAAAACAAAAGGCUGCAAUCACAGAAUUGAUGUCAGUUCCGCACACGAAAGAGAUGCACUUAAAUAAAUCUCCAAUCGAAAGCUCUGCUUUUGAAAUCUCAAAAGGA-AAAC
....((((..........(((((..((((......))))..))))).......(((..(((((............)))))...)))...))))..(((((((....)))))))..-.... ( -24.10)
>DroYak_CAF1 17580 119 + 1
AACCGAGCAAAAACAAAAGGCUGCAAUCACAGAAUUGAUGUCAGUUCCGCACACGAACGAGAUGCACUUCAAUUAAUUUCGCAUCGAAAUCUCUGUUGUUGCAAUCCUAAAAGGA-AAAA
.................(((.((((((.(((((.(((((((..((((.......))))(((((............))))))))))))....))))).))))))..))).......-.... ( -25.80)
>consensus
AACCAAGCAAAAACAAAAGGCUGCAAUCACAGAAUUGAUGUCAGUUCCGCACACGAACGAGAUGCACUUAAAUAAAUCUCGUAUCGAAAUCUCUGCUGUUGAAAUCUUAAAAAGA_AAAA
.....(((..........(((((..((((......))))..))))).......((((((((((............))))))).)))........)))....................... (-16.28 = -16.40 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:26 2006