Locus 7942

Sequence ID X_DroMel_CAF1
Location 19,815,254 – 19,815,356
Length 102
Max. P 0.886950
window13033

overview

Window 3

Location 19,815,254 – 19,815,356
Length 102
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 95.07
Mean single sequence MFE -14.70
Consensus MFE -13.12
Energy contribution -13.36
Covariance contribution 0.24
Combinations/Pair 1.05
Mean z-score -1.44
Structure conservation index 0.89
SVM decision value 0.94
SVM RNA-class probability 0.886950
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19815254 102 - 22224390
ACAACAA---GCCAUGUAACCACCACACUUUCGCAGGAACAACGGGGCAACAACUCUGACGCUUCCUUACAACACCUAAACGUUCCAUUAAAUUUACGUUUUACA
.......---....((((................((((((..(((((......)))))..).)))))..........((((((............)))))))))) ( -13.00)
>DroSec_CAF1 21225 99 - 1
ACAACAA---GCCAUGUAACC---ACACUUUCGCAGGAACAACGGGGCAACAACUCCGACGCUUCCUUACAACACCUAAACGUUCCAUUAAAUUUACGUUUUACA
.......---....((((...---..........((((((..(((((......)))))..).)))))..........((((((............)))))))))) ( -15.20)
>DroSim_CAF1 18247 99 - 1
ACAACAA---GCCAUGUAACC---ACACUUUCGCAGGAACAACGGGGCAACAACUCCGACGCUUCCUUACAACACCUAAACGUUCCAUUAAAUUUACGUUUUACA
.......---....((((...---..........((((((..(((((......)))))..).)))))..........((((((............)))))))))) ( -15.20)
>DroEre_CAF1 13459 99 - 1
ACAACAA---GCCAUGUAACC---ACACUUUCCCAGAAACAACGGGGCAGCAACUCCGACGCUUCGUUACAACACCUAAACGUUCCAUUAAAUUUACGUUUUACA
.......---....((((((.---....((((...))))...(((((......))))).......))))))......((((((............)))))).... ( -13.50)
>DroYak_CAF1 13811 102 - 1
ACAACAAGCAGCCAUGUAACC---ACACUUUCCCAGGAACAACGGGGUAACAACUCCGACGCUUCCUUACAACACCUAAACGUUCCAUUAAAUUUACGUUUUACA
..............((((...---..........((((((..((((((....))))))..).)))))..........((((((............)))))))))) ( -16.60)
>consensus
ACAACAA___GCCAUGUAACC___ACACUUUCGCAGGAACAACGGGGCAACAACUCCGACGCUUCCUUACAACACCUAAACGUUCCAUUAAAUUUACGUUUUACA
..............((((................((((((..(((((......)))))..).)))))..........((((((............)))))))))) (-13.12 = -13.36 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:23 2006