Locus 7939

Sequence ID X_DroMel_CAF1
Location 19,811,318 – 19,811,424
Length 106
Max. P 0.740956
window13026

overview

Window 6

Location 19,811,318 – 19,811,424
Length 106
Sequences 5
Columns 111
Reading direction forward
Mean pairwise identity 81.20
Mean single sequence MFE -28.48
Consensus MFE -17.26
Energy contribution -19.14
Covariance contribution 1.88
Combinations/Pair 1.16
Mean z-score -1.99
Structure conservation index 0.61
SVM decision value 0.45
SVM RNA-class probability 0.740956
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19811318 106 + 22224390
CAGGUCAUCAUCGGAUUUCCGGA--ACACUGCCACACUUAAGACAUUUGCAAGAUAUCUUUAUCAUUUGAGAGAGAAGAUUAUGCAUGACAAAGGC---AGAUGCCUCAUU
.(((.((((.((((....)))).--....((((...(....).....((((.(((.(((((.((....)).)))))..))).)))).......)))---)))))))).... ( -25.10)
>DroSec_CAF1 17241 109 + 1
CAGGUCAUCAUCGGGCAUCCGGA--ACACUGCCACGCUUAAGACAUUUGCAAGAUAUCUUUAUCAUUUGAUAGAGAAGAUUUUGCACGACAAAGGCCAAAGAUGCCUCAUU
.(((.((((.((((....)))).--.....(((.(......).....((((((((.((((((((....))))))))..)))))))).......)))....))))))).... ( -30.40)
>DroSim_CAF1 14311 99 + 1
CAGGUCAUCAUCGGGCAUCCGGA--ACACUGCCACGCUUAAGACAUUUGCAAGAUAUCUUUAUCAUUUGAUAGAGAAGAU-------GACACAGGC---AGAUGCCUCAUU
...(((((((((.((((......--....))))..((...........))..))).((((((((....)))))))).)))-------)))..((((---....)))).... ( -28.50)
>DroEre_CAF1 9497 108 + 1
CGGGCCAUCCUCGGGUUUCCGGUUUAAGCUGCCGCGCUUAAGACUUUUGCAAGAUUUCCUUAUCAAUCGAUUAAGGAAAAUUUGCAUACCUAAAGC---GGAUGCUUCAUU
.(((.(((((.........((((.......)))).((((.((.....((((((.((((((((((....)).)))))))).))))))...)).))))---))))).)))... ( -32.80)
>DroYak_CAF1 9714 106 + 1
CAGUUCAUCAUCGGGCUUCCGGA--ACGCUGCCACGCUUAAGACUUUUGCAAGAUUUCUUUAUCAUUUGAUUAAGGAAAAUUUGCAUGACUGAAGC---AGAUGCUUCAUU
..((((.....(((....)))))--))((......))..........((((((.((((((((((....)).)))))))).))))))....((((((---....)))))).. ( -25.60)
>consensus
CAGGUCAUCAUCGGGCUUCCGGA__ACACUGCCACGCUUAAGACAUUUGCAAGAUAUCUUUAUCAUUUGAUAGAGAAGAUUUUGCAUGACAAAGGC___AGAUGCCUCAUU
.(((.((((.((((....)))).............((((........((((((((.((((((((....))))))))..))))))))......))))....))))))).... (-17.26 = -19.14 +   1.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:17 2006