Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,811,133 – 19,811,225 |
Length | 92 |
Max. P | 0.738085 |
Location | 19,811,133 – 19,811,225 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 85.49 |
Mean single sequence MFE | -30.46 |
Consensus MFE | -24.73 |
Energy contribution | -24.40 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.12 |
Mean z-score | -1.98 |
Structure conservation index | 0.81 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.738085 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19811133 92 - 22224390 AUUAGCUGUGUUGUCCCGACCUCUUGACUGGACUCAACGGGGGUGGAGCUCCACCUGGAGCAGACUC----------UCAUUCCCACAUUCAUC------CAGACACU .......(((((((((.(.........).)))).....((((((((((((((....)))))....))----------.))))))).........------..))))). ( -27.60) >DroSec_CAF1 17040 108 - 1 AUUAGCUGUGUUGUCCCGACCUCUCGACUGGACUCAACUGGGGUGGAGCUCCACCUGGAGCAGACUCACUCCCACACCCACACCCACAUCCAUUUCCAGGCAGACACU .......(((((....(((....))).(((((......((((((((.(((((....))))).((.....))......)))).))))........)))))...))))). ( -32.04) >DroSim_CAF1 14110 108 - 1 AUUAGCUGUGUUGUCCCGACCUCUCGACUGGACUCAACUGGGGUGGAGCUCCACCUGGAGCAGACUCACUUCCACACCCAUACCCACAUCCAUUUCCAGGCAGACACU .......((((((((.(((....)))..((((......((((((((((((((....)))))((.....))))))).))))........))))......)))).)))). ( -31.74) >consensus AUUAGCUGUGUUGUCCCGACCUCUCGACUGGACUCAACUGGGGUGGAGCUCCACCUGGAGCAGACUCACU_CCACACCCAUACCCACAUCCAUUUCCAGGCAGACACU .......((((((((((((....)))...))))......(((((((.(((((....))))).(........).....)))).))).................))))). (-24.73 = -24.40 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:16 2006