| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,809,484 – 19,809,583 |
| Length | 99 |
| Max. P | 0.942525 |
| Location | 19,809,484 – 19,809,583 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 72.35 |
| Mean single sequence MFE | -30.92 |
| Consensus MFE | -6.52 |
| Energy contribution | -6.19 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.32 |
| Mean z-score | -3.00 |
| Structure conservation index | 0.21 |
| SVM decision value | 1.33 |
| SVM RNA-class probability | 0.942525 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19809484 99 - 22224390 AAUGCAUUGCAUUCAGUGA-----CAGCUAAGCCAG-CGUAGAGGUAAAAUAAAAAUGUUAUGUU-CUAU--ACGGGCGAUUGAAAUGCAUUGAAUG--GUGCGG-CUGGC ..(((((..(((((((((.-----((.(...(((.(-..(((((((((.((....)).)))).))-))).--.).)))....)...)))))))))))--))))).-..... ( -25.70) >DroPse_CAF1 10182 104 - 1 AAUGCACUGCAUUCAAUUCAAUUCAGGCUAAGCCACUCAGGGCGAGCAAAUUAAAAUGUUGUGGGUCCGUUGGCCUGCAAUUGAAAUGCAUUGAAUGC-------AAUUGC ...(((.((((((((((.((.((((.(((..(((......))).)))..........((((..((((....))))..)))))))).)).)))))))))-------)..))) ( -37.00) >DroSec_CAF1 15465 97 - 1 AAUGCAUUGCAUUCAGUGA-----CAGCUAAGCCGG-CGUAGAGGUAAAAUAAAAAUGCUGUGUU-CUAU--ACGGGCGAUUGAAAUGCAUUGAAUGCGGUGCGG-----C ..((((((((((((((((.-----((.(...(((.(-..((((((((.........))))....)-))).--.).)))....)...)))))))))))))))))).-----. ( -35.80) >DroEre_CAF1 7737 94 - 1 AAUGCAUUGCAUUCAGUGA-----CAGCUAAGCCAG-CGUACAGGUAAAAUAAAAAAGUUAUGUC-GUGU--ACGAGCGAUUGAAAUGCAUUGAAUC---UGU-----GAG ((((((((.((.(((((..-----..)))..((...-((((((.(....((((.....))))..)-.)))--))).)))).)).)))))))).....---...-----... ( -22.70) >DroYak_CAF1 8169 100 - 1 AAUGCAUUGCAUUCAGUGA-----CAGCUAAGCCAG-CGUAGAGAUAAAAUAAAAAUGUUAUGUUUCUGU--GCGGCCGAUUGAAA-GCAUUGAAUG--GUGUGGAAUGGC ..(.(((..(((((((((.-----...(...(((.(-((((((((((.((((....)))).)))))))))--))))).....)...-.)))))))))--..))).)..... ( -28.10) >DroPer_CAF1 10527 104 - 1 AAUGCACUGUAUUCAAUUCAAUUCAGGCUAAGCCACUCAGGGCGAGCAAAUUAAAAUGUUGUGGGUCUGUUGGCCUGCAAUUGAAAUGCAUUGAAUGC-------AAUUGC ...(((.((((((((((.((.((((.(((..(((......))).)))..........((((..((((....))))..)))))))).)).)))))))))-------)..))) ( -36.20) >consensus AAUGCAUUGCAUUCAGUGA_____CAGCUAAGCCAG_CGUAGAGAUAAAAUAAAAAUGUUAUGUU_CUGU__ACGGGCGAUUGAAAUGCAUUGAAUG___UG____AUGGC ....((.((((((((((.........((...))....(((((................)))))................)))).)))))).)).................. ( -6.52 = -6.19 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:15 2006