| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,807,818 – 19,807,942 |
| Length | 124 |
| Max. P | 0.823161 |
| Location | 19,807,818 – 19,807,916 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 82.45 |
| Mean single sequence MFE | -16.73 |
| Consensus MFE | -10.26 |
| Energy contribution | -10.07 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.702425 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19807818 98 - 22224390 CCUCUUA-AAUUAUUCACUGGGCGCGUGAAAGUAUUUUACAUACGCUUUCACUUUACUUUCGCACACAUCCCAACCCCGCUAGCAAAAUGUGACCCCAA .......-..........((((...(((((((((....................))))))))).(((((..................)))))..)))). ( -16.92) >DroSec_CAF1 6270 97 - 1 CCUCUUA-AAUUAUUCACUUGGCGCGUGAAAGUAUUUUACAUACGCUUUCACUUUACUUUCCCACACAACCCACCCCCCUUGGCAAAAUGUGACCCC-A .......-............(((((((((((((...........))))))))..................(((.......)))......))).))..-. ( -13.40) >DroEre_CAF1 6195 96 - 1 CCUCUUA-AAUUAUUCACUGGGCGCGUGAAAGUAUUUUACAUACGCUUUCACUUUACUUUCCCACAUAUCCCGCUCCUCCU-GCAAACUGUGACCCG-A .......-..........(((((((((((((((...........))))))))....................((.......-)).....))).))))-. ( -18.80) >DroPer_CAF1 7784 96 - 1 GCUCUUAAAAUUAUUCACUGGGCGCGUGAAAGUAUUUUACAUACGCUUUCACUUUACUCUCUCGCAG-CCUCCCUCUCUCU-GUUAGCCCUGUCUCU-G ................((.((((..((((((((...........))))))))...........((((-...........))-))..)))).))....-. ( -17.80) >consensus CCUCUUA_AAUUAUUCACUGGGCGCGUGAAAGUAUUUUACAUACGCUUUCACUUUACUUUCCCACACAUCCCACCCCCCCU_GCAAAAUGUGACCCC_A ...................(((...((((((((...........))))))))............((((....................)))).)))... (-10.26 = -10.07 + -0.19)
| Location | 19,807,844 – 19,807,942 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 79.17 |
| Mean single sequence MFE | -21.89 |
| Consensus MFE | -12.31 |
| Energy contribution | -12.19 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.823161 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19807844 98 - 22224390 ACUC-----GGUGCCCA---------GCUAUGUGUUCUCGCCUCUUA-AAUUAUUCACUGGGCGCGUGAAAGUAUUUUACAUACGCUUUCACUUUACUUUCGCACACAUCCCA ....-----.(((((((---------(....(((.............-...)))...))))))))(((((((((....................))))))))).......... ( -23.14) >DroSec_CAF1 6295 98 - 1 ACUC-----GGUGCCCA---------GCUCUGUGUUCUCGCCUCUUA-AAUUAUUCACUUGGCGCGUGAAAGUAUUUUACAUACGCUUUCACUUUACUUUCCCACACAACCCA ....-----(((((...---------))..(((((...((((.....-............)))).((((((((...........))))))))...........)))))))).. ( -18.53) >DroEre_CAF1 6219 93 - 1 ACUC-----GGAGCUCUGU--------------GUUCUCGCCUCUUA-AAUUAUUCACUGGGCGCGUGAAAGUAUUUUACAUACGCUUUCACUUUACUUUCCCACAUAUCCCG ....-----(((....(((--------------(....(((((....-...........))))).((((((((...........))))))))..........))))..))).. ( -19.26) >DroYak_CAF1 6448 107 - 1 ACUC-----GGAGCUCUGUGUUCUGUGUUCUGUGUUCUCGCCUCCUA-AAUUAUUCACUGGGCGCGUGAAAGUAUUUUACAUACGCUUUCACUUUACUUUCCCACAUAUCCCA ((.(-----(((((.....)))))).))..((((....(((((....-...........))))).((((((((...........))))))))..........))))....... ( -23.46) >DroPer_CAF1 7808 107 - 1 GCUUUUGCCAGGACUCC---UUCUG-GCUCUCC-AUCUGGGCUCUUAAAAUUAUUCACUGGGCGCGUGAAAGUAUUUUACAUACGCUUUCACUUUACUCUCUCGCAG-CCUCC ((....(((((((....---)))))-))...((-....)))).................(((((((.((.((((....................)))).)).))).)-))).. ( -25.05) >consensus ACUC_____GGAGCUCA_________GCUCUGUGUUCUCGCCUCUUA_AAUUAUUCACUGGGCGCGUGAAAGUAUUUUACAUACGCUUUCACUUUACUUUCCCACACAUCCCA .........(((..........................((((..................)))).((((((((...........))))))))................))).. (-12.31 = -12.19 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:14 2006