Locus 7935

Sequence ID X_DroMel_CAF1
Location 19,807,714 – 19,807,811
Length 97
Max. P 0.545719
window13021

overview

Window 1

Location 19,807,714 – 19,807,811
Length 97
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 82.98
Mean single sequence MFE -30.80
Consensus MFE -18.68
Energy contribution -18.79
Covariance contribution 0.11
Combinations/Pair 1.04
Mean z-score -2.22
Structure conservation index 0.61
SVM decision value 0.02
SVM RNA-class probability 0.545719
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19807714 97 - 22224390
-----------------UGGGUGUGUGUUUAAGUGUUGAGUGCACAUCGCUUGAUGUCACACCAAAAAGUCAUUCAAUAUUUAUG----CAUAUUACGCAUACGCCCCGAUGCCACGA
-----------------.((((((((((.(((((((((((((.(((((....))))))))((......))...))))))))))..----........))))))))))........... ( -27.90)
>DroPse_CAF1 7333 114 - 1
UCGGUGUGCUUGGGUGUUGGGUG--UGCUUAAGUGUUGAGUGCACAUCGCUUGAUGUCACACCGAAAAGUCAUUCAAUAUUUAUGUAUGUAUAUUACGCAUACGCCAGGG--CAACGC
((((((((((..((((....(((--..((((.....))))..)))..))))..).).))))))))...................((((((.......))))))((....)--)..... ( -38.90)
>DroSec_CAF1 6168 95 - 1
-----------------UGGGUG--UGUUUAAGUGUUGAGUGCACAUCGCUUGAUGUCACACCAAAAAGUCAUUCAAUAUUUAUG----CAUAUUACGCAUACGCCCCGAUGCCACGA
-----------------.(((((--(((.(((((((((((((.(((((....))))))))((......))...)))))))))).(----(.......))))))))))........... ( -25.90)
>DroEre_CAF1 6093 95 - 1
-----------------UGGGUG--UGUUUAAGUGUUGAGUGCACAUCGCUUGAUGUCACACCAAAAAGUCAUUCAAUAUUUAUG----CAUAUUACGCAUACGCCCCGAUGCCCCGA
-----------------.(((((--(((.(((((((((((((.(((((....))))))))((......))...)))))))))).)----))))....((((.((...))))))))).. ( -26.90)
>DroYak_CAF1 6322 95 - 1
-----------------UGGGUG--UGUUUAAGUGUUGAGUGCACAUCGCUUGAUGUCACACCAAAAAGUCAUUCAAUAUUUAUG----CAUAUUACGCAUACGCCCCGAUGGCCCAA
-----------------((((((--(((.(((((((((((((.(((((....))))))))((......))...)))))))))).)----))).....((....)).......))))). ( -26.30)
>DroPer_CAF1 7663 114 - 1
UCGGUGUGCUUGGGUGUUGGGUG--UGCUUAAGUGUUGAGUGCACAUCGCUUGAUGUCACACCGAAAAGUCAUUCAAUAUUUAUGUAUGUAUAUUACGCAUACGCCAGGG--CAACGC
((((((((((..((((....(((--..((((.....))))..)))..))))..).).))))))))...................((((((.......))))))((....)--)..... ( -38.90)
>consensus
_________________UGGGUG__UGUUUAAGUGUUGAGUGCACAUCGCUUGAUGUCACACCAAAAAGUCAUUCAAUAUUUAUG____CAUAUUACGCAUACGCCCCGAUGCCACGA
..................(((((..(((.(((((((((((((.(((((....))))))))((......))...))))))))))..............)))..)))))........... (-18.68 = -18.79 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:12 2006