| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,804,546 – 19,804,657 |
| Length | 111 |
| Max. P | 0.725410 |
| Location | 19,804,546 – 19,804,657 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 81.19 |
| Mean single sequence MFE | -40.15 |
| Consensus MFE | -24.64 |
| Energy contribution | -26.58 |
| Covariance contribution | 1.95 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.725410 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19804546 111 + 22224390 CG-GUUGC-CUGGCAUCCUAG-----CAUUUUCGCCAGAGAAUUCAAGCUGCUUAGUGGCGAGGGAUGGCGAUGCCGUCUCAUAAAUCCUGCCUGCGGCAUUGCCACAGCCAUACGGC ..-...((-((((((((((.(-----.((((((....)))))).)..((..(...)..))..)))))(((((((((((..((.......))...)))))))))))...))))...))) ( -41.50) >DroPse_CAF1 4046 101 + 1 AGGGUUGCCCUGGCAACU-UG-----CCUGUGCGCCAAAGCAUUUAAUCUGCUUAGUGGG-------AGCGAUGUCGACUCAUAAAUCCUGCUUGUGGCAUGGCCAUAGCCAUG---- .(((((((....))))))-)(-----(....))(((((((((.......)))))((..((-------(...(((......)))...)))..))..))))(((((....))))).---- ( -35.30) >DroSec_CAF1 3188 111 + 1 CG-GUUGC-CUGGCAACCGAG-----CAUUUUCGCCAGAGAAUUCAAGCUGCUUAGUGGCGAGAGAUGGCGAUGCCGACUCAUAAAUCCUGCCUGCGGCAUUGCCACAGCCAUACAGC ((-(((((-...))))))).(-----.((((((....)))))).)..((((....(((((....(.(((((((((((...((.......))....)))))))))))).))))).)))) ( -42.30) >DroEre_CAF1 3005 111 + 1 CG-GUUGC-CUGGCAUCCUAG-----CAUUUUCGUUAGAGAAUUCAAGCUGCUUAGUGGCGAGAGAUGGCGAUGUCGACUCAUAAAUCCUGCCUGCGGCAUUGCCACAGCCAUACAGU .(-((((.-.(((((((((((-----(......))))).))......(((((.....((((.((.((((((....)).).)))...)).)))).)))))..))))))))))....... ( -37.20) >DroYak_CAF1 3295 116 + 1 CG-GUUGC-CUGGCAUCCUAGCCAGGCAUUUUCGCCAGAGAAUUCAAGCUGCUUAGUGGCGAGAGAUGGCGAUGCCGACUCAUAAAUCCUGCCUGCGGCAUUGCCACAGCCAUACAGU .(-(((((-(((((......))))))).((((((((((((...........)))..))))))))).(((((((((((...((.......))....))))))))))).))))....... ( -49.30) >DroPer_CAF1 4201 101 + 1 AGGGUUGCCCUGGCAACU-UG-----CCUGUGCGCCAAAGCAUUUAAUCUGCUUAGUGGG-------AGCGAUGUCGACUCAUAAAUCCUGCUUGUGGCAUGGCCAUAGCCAUG---- .(((((((....))))))-)(-----(....))(((((((((.......)))))((..((-------(...(((......)))...)))..))..))))(((((....))))).---- ( -35.30) >consensus CG_GUUGC_CUGGCAACCUAG_____CAUUUUCGCCAGAGAAUUCAAGCUGCUUAGUGGCGAGAGAUGGCGAUGCCGACUCAUAAAUCCUGCCUGCGGCAUUGCCACAGCCAUACAG_ ..........((((..............((((((((((((...........)))..))))))))).(((((((((((...((.......))....)))))))))))..))))...... (-24.64 = -26.58 + 1.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:11 2006