Locus 7932

Sequence ID X_DroMel_CAF1
Location 19,797,046 – 19,797,141
Length 95
Max. P 0.704948
window13015

overview

Window 5

Location 19,797,046 – 19,797,141
Length 95
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 76.37
Mean single sequence MFE -37.78
Consensus MFE -28.36
Energy contribution -31.14
Covariance contribution 2.78
Combinations/Pair 1.06
Mean z-score -1.25
Structure conservation index 0.75
SVM decision value 0.36
SVM RNA-class probability 0.704948
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19797046 95 + 22224390
AUUG----GUUGGUCGCAGAACUCGGAACUCGCAGUCCCUGAGUUCCGAAGCUCUC------------------CGGGCUCGACCGCCAGUGCCUUGCGAGCGGUCAUGGGCUAAGC
.(((----((((.(((.(((.(((((((((((.......))))))))).)).))).------------------))).)..((((((..((.....))..))))))...)))))).. ( -37.20)
>DroSec_CAF1 5324 95 + 1
AUUG----GGUGGUCGCAGAACUCGGAACUCGCAGUCCCUGAGUUCCGAAGCUCGC------------------CGGGCUCGACCGCCAGUGCCUUGCGAGCGGUCAUGGGCUAAGC
....----..(((((.((..((((((((((((.......)))))))))).((((((------------------.((((.(........).)))).)))))).))..)))))))... ( -41.30)
>DroSim_CAF1 9598 96 + 1
AUUG----GGUGGUCGCAGAACUCGGAACCCUCAUUCCCUGAGUUCCAAAGCCCUC-------U----------CUGGCUCGAUCGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
....----((((((((..((((((((((......))))..))))))...((((...-------.----------..))))))))))))............................. ( -24.40)
>DroEre_CAF1 4391 95 + 1
AUUG----GGUGGUCGCAGAACUCGGAACUCGCAGUCCCUGAGUUCCAAAGCUCGC------------------CGGGCUCGACCGCCAGUGCCUUGCGAGCGGUCAUGGGCUAAGC
....----..(((((.((..(((.((((((((.......))))))))...((((((------------------.((((.(........).)))).)))))))))..)))))))... ( -38.90)
>DroYak_CAF1 7945 117 + 1
AUUGGAUGGGUGGUCGCAGAACUCGGAACUCGCAGUCCCUGAGUUCCGAAGCUCGCCGGAUUCUCCGGAUUUGCCGGGCUCGACCGCCAGUGCCUUGCGAGCGGUCAUGGGCUAAGC
........((((((((......((((((((((.......))))))))))((((((.((((((.....)))))).))))))))))))))...((((.((.....))...))))..... ( -47.10)
>consensus
AUUG____GGUGGUCGCAGAACUCGGAACUCGCAGUCCCUGAGUUCCGAAGCUCGC__________________CGGGCUCGACCGCCAGUGCCUUGCGAGCGGUCAUGGGCUAAGC
........((((((((......((((((((((.......))))))))))((((((.((((((.....)))))).))))))))))))))...((((.((.....))...))))..... (-28.36 = -31.14 +   2.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:07 2006