| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,792,498 – 19,792,597 |
| Length | 99 |
| Max. P | 0.744253 |
| Location | 19,792,498 – 19,792,597 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 71.27 |
| Mean single sequence MFE | -43.73 |
| Consensus MFE | -20.04 |
| Energy contribution | -20.92 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.46 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.744253 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19792498 99 - 22224390 AGGUGGGCCAUCCCGGCCAGCCGGGCUAC---AUGGGCGUACGGCCGGACCCCAACUACCCGGG---UACCUAUGGCUACCAGAAUGGCGGAGCAAUCAUCG---------------GCA .(((((.((((.((((((.(((.(.....---.).)))....))))))((((.........)))---)....)))))))))......((.((.......)).---------------)). ( -37.90) >DroSec_CAF1 80 99 - 1 AGGUGGGCCAGCCCGGCCAGCCGGGCUAC---AUGGGCGUACGGCCGGACCCCAACUACCCGGG---UGCCUAUGGCUACCAGAAUGGCGGAGCAAUCAUCG---------------CCA .(((((...(((((((....))))))).(---(((((((..(((..((.......))..)))..---)))))))).)))))....(((((((....))..))---------------))) ( -47.90) >DroEre_CAF1 45 99 - 1 AGGUGGGCCAGCCCGGACAGCCGGGCUAC---AUGGGCGUACGGCCGGAUCCCAGCUACCCGGG---AUCCUAUGGCUACCAGAAUGGAGGAGCAAUCAUCG---------------CCA .(((((((((((((((....)))))))((---......))..))))(((((((........)))---))))....(((.((........)))))......))---------------)). ( -45.50) >DroYak_CAF1 3248 99 - 1 AGGUGGGUCAGCCGGGUCAGCCGGGCUAC---AUGGGCGUACGGCCGGAUCCCAACUACCCGGG---AUCCUAUGGCUACCACAAUGGUGGAGCAAUCUUCG---------------CCA .(((((...((((.((....)).)))).(---((((((.....)))(((((((........)))---)))))))).)))))....((((((((....)))))---------------))) ( -46.30) >DroAna_CAF1 25 81 - 1 --------CAGCCUGGACAGCCGGGCUAC---AUGGGUGUCCG---GGAUCCCAACUAUCCGGGCGGAGUCUACGGCUACCGGAAUACGG----------CG---------------ACA --------..(((.(((((.((((....)---.))).)))))(---(....)).....(((((....(((.....))).)))))....))----------).---------------... ( -31.10) >DroPer_CAF1 80 114 - 1 AG---GGGCAGCCCGGACAGCCGGGCUACAACAUGGGAGGCCGACUCGAUCCGGGAUAUCCCGG---CAGCUAUGGCUAUCGGGGCGGAGCAGCAACGAUCACCCAUGGCCGUGGUGUCA ..---.((((((((((....)))))))....((((((.(..((.(((((((((((....)))))---.(((....)))))))))((......))..))..).)))))))))......... ( -53.70) >consensus AGGUGGGCCAGCCCGGACAGCCGGGCUAC___AUGGGCGUACGGCCGGAUCCCAACUACCCGGG___AACCUAUGGCUACCAGAAUGGAGGAGCAAUCAUCG_______________CCA .....(((((((((((....))))))).......(......)))))....(((........)))...........(((.((........))))).......................... (-20.04 = -20.92 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:04 2006