| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,736,529 – 19,736,623 |
| Length | 94 |
| Max. P | 0.864990 |
| Location | 19,736,529 – 19,736,623 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 82.09 |
| Mean single sequence MFE | -38.50 |
| Consensus MFE | -21.88 |
| Energy contribution | -22.12 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.42 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.84 |
| SVM RNA-class probability | 0.864990 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19736529 94 + 22224390 GCAGUGCCGCGCAAGGCGAGAAUUGGCAAGAGCAUGGCCAGGGAAAUGGUCUAUGCUGCCCAGCAGCA---GCUG---------CUUCCGGAGAAGCAGUUGAAGC ((..((((......))))......((((...(((((((((......))).))))))))))..))..((---((((---------((((....)))))))))).... ( -39.00) >DroVir_CAF1 39485 91 + 1 GUGAUGCCACGCAAGGCGCGCAUUGGCAAGAGCAUGGCCAGGGAAAUGGUCUAUGCGGCACAGCAGCA---ACAGCAACCGUUGCUG------------CAGCAAC (((.((((((((.....)))...)))))...(((((((((......))).))))))..))).((((((---((.......)))))))------------)...... ( -38.20) >DroSec_CAF1 32309 94 + 1 GCAGUGCCGCGCAAGGCGAGGAUUGGCAAGAGCAUGGCCAGGGAAAUGGUCUAUGCUGCCCAGCAGCA---GCUG---------CUUCCGGAGAAGCAGUUGAAGC .(..((((......))))..)...((((...(((((((((......))).))))))))))..((..((---((((---------((((....))))))))))..)) ( -39.50) >DroEre_CAF1 28640 94 + 1 GCAGUGCCGCGCAAGGCGAGGAUUGGCAAAAGCAUGGCCAGGGAAAUGGUCUAUGCUGCCCAGCAGCA---GCUG---------CUUCCGGAGAAGCAGCUGAAGC .(..((((......))))..)...((((...(((((((((......))).))))))))))..((..((---((((---------((((....))))))))))..)) ( -41.90) >DroYak_CAF1 29420 97 + 1 GCAGUGCCGCGCAAGGCGAGGAUUGGCAAGAGCAUGGCCAGGGAAAUGGUCUAUGCUGCCCAGCAGCAGCAGUUG---------CUUCCGGAGAAGCAGUUAAGGC ((..((((......)))).(((..((((...(((((((((......))).)))))))))).((((((....))))---------)))))......))......... ( -33.90) >consensus GCAGUGCCGCGCAAGGCGAGGAUUGGCAAGAGCAUGGCCAGGGAAAUGGUCUAUGCUGCCCAGCAGCA___GCUG_________CUUCCGGAGAAGCAGUUGAAGC ((..((((......))))......((((...(((((((((......))).))))))))))..)).......................................... (-21.88 = -22.12 + 0.24)
| Location | 19,736,529 – 19,736,623 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 82.09 |
| Mean single sequence MFE | -33.24 |
| Consensus MFE | -19.24 |
| Energy contribution | -19.36 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.58 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.530358 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19736529 94 - 22224390 GCUUCAACUGCUUCUCCGGAAG---------CAGC---UGCUGCUGGGCAGCAUAGACCAUUUCCCUGGCCAUGCUCUUGCCAAUUCUCGCCUUGCGCGGCACUGC ((..((.(((((((....))))---------))).---))..))..((((((((.(.(((......)))).))))...)))).......(((......)))..... ( -31.40) >DroVir_CAF1 39485 91 - 1 GUUGCUG------------CAGCAACGGUUGCUGU---UGCUGCUGUGCCGCAUAGACCAUUUCCCUGGCCAUGCUCUUGCCAAUGCGCGCCUUGCGUGGCAUCAC (..((.(------------(((((((((...))))---)))))).))..)((((.(.(((......)))).))))...(((((.((((.....))))))))).... ( -33.90) >DroSec_CAF1 32309 94 - 1 GCUUCAACUGCUUCUCCGGAAG---------CAGC---UGCUGCUGGGCAGCAUAGACCAUUUCCCUGGCCAUGCUCUUGCCAAUCCUCGCCUUGCGCGGCACUGC ((..((.(((((((....))))---------))).---))..))..((((((((.(.(((......)))).))))...)))).......(((......)))..... ( -31.40) >DroEre_CAF1 28640 94 - 1 GCUUCAGCUGCUUCUCCGGAAG---------CAGC---UGCUGCUGGGCAGCAUAGACCAUUUCCCUGGCCAUGCUUUUGCCAAUCCUCGCCUUGCGCGGCACUGC ((..((((((((((....))))---------))))---))..))..((((((((.(.(((......)))).))))...)))).......(((......)))..... ( -38.00) >DroYak_CAF1 29420 97 - 1 GCCUUAACUGCUUCUCCGGAAG---------CAACUGCUGCUGCUGGGCAGCAUAGACCAUUUCCCUGGCCAUGCUCUUGCCAAUCCUCGCCUUGCGCGGCACUGC ........((((((....))))---------))..((((((.((.(((((((((.(.(((......)))).))))).............)))).)))))))).... ( -31.51) >consensus GCUUCAACUGCUUCUCCGGAAG_________CAGC___UGCUGCUGGGCAGCAUAGACCAUUUCCCUGGCCAUGCUCUUGCCAAUCCUCGCCUUGCGCGGCACUGC .................................((...((((((..((((((((.(.(((......)))).))))...)))).......((...))))))))..)) (-19.24 = -19.36 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:02 2006