Locus 7927

Sequence ID X_DroMel_CAF1
Location 19,734,790 – 19,734,896
Length 106
Max. P 0.523910
window13007

overview

Window 7

Location 19,734,790 – 19,734,896
Length 106
Sequences 3
Columns 108
Reading direction reverse
Mean pairwise identity 78.88
Mean single sequence MFE -54.77
Consensus MFE -44.60
Energy contribution -43.73
Covariance contribution -0.87
Combinations/Pair 1.29
Mean z-score -1.09
Structure conservation index 0.81
SVM decision value -0.02
SVM RNA-class probability 0.523910
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19734790 106 - 22224390
GUAGGGCACACCCUGGUGGGCGGCGGCUGCCGCUGCUGCGGCCGCCACGGCGCCGGCCGGAUACGGCUGUGGUUGCGGCG--GAUGCUGCGCCUGUUGCGGAUUGUGG
(((((((.(((....))).((((((.(((((((.((..((((((...((((....))))....))))))..)).))))))--).))))))))))..)))......... ( -61.20)
>DroSec_CAF1 30478 106 - 1
GUAGGGCACACCCUGGUGGGCGGCAGCUGCCGCUGCUGCGGCCGCCACGGCGCCGGCCGGAUACGGCUGUGGCUGCGGCG--GAUGCUGCACCUGUUGCGGAUUGUGG
.(((((....)))))..((((((((.(((((((.((..((((((...((((....))))....))))))..)).))))))--).)))))).))............... ( -60.50)
>DroWil_CAF1 36629 108 - 1
AUAGGGCACGCCUGGAUGAGCGGCAGCGGCAGCUGCAGCGGCCGCCAAAGCGCUACCCGGAUAUGGCUGGGGCUGUUGCGCUGGCACAGCAACUGGAGUCGAUUGUUC
...(((....)))(((..(.((((...(.((((.(((((((((((....)))...(((((......))))))))))))))))).).(((...)))..)))).)..))) ( -42.60)
>consensus
GUAGGGCACACCCUGGUGGGCGGCAGCUGCCGCUGCUGCGGCCGCCACGGCGCCGGCCGGAUACGGCUGUGGCUGCGGCG__GAUGCUGCACCUGUUGCGGAUUGUGG
..((((....))))((((((((((....))))))(((((((((((....))..((((((....)))))).)))))))))..........))))............... (-44.60 = -43.73 +  -0.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:00 2006