Locus 7926

Sequence ID X_DroMel_CAF1
Location 19,733,339 – 19,733,434
Length 95
Max. P 0.671555
window13006

overview

Window 6

Location 19,733,339 – 19,733,434
Length 95
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 79.19
Mean single sequence MFE -35.78
Consensus MFE -22.41
Energy contribution -24.25
Covariance contribution 1.84
Combinations/Pair 1.25
Mean z-score -1.57
Structure conservation index 0.63
SVM decision value 0.29
SVM RNA-class probability 0.671555
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19733339 95 - 22224390
AUGCAGUGACGGCGAUAUGUGGAGCGUACUCAGCAAACCGCCGGAGGGCGGUACCGUUUUA-UGACUGUGA----GCGGAUGUUGUUGCUGA------UGGCGUCG
.......((((.((.((((.....)))).(((((((((((((....)))))).((((((..-.......))----))))......)))))))------)).)))). ( -35.50)
>DroSec_CAF1 29144 95 - 1
AUGCAGUGACGGCGAGAUGUGGAGCGUACUCAGCAAGCCGCCGGAGGGCGGUACGGUUUUA-UGACUGUGA----GCGGAUGUUGUUGCUGA------UGGCGCCG
...(((..(((((((((((.....))).))).((..((((((....))))))((((((...-.))))))..----))....)))))..))).------........ ( -36.40)
>DroSim_CAF1 6081 95 - 1
GUGCAGUGACGGCGAGAUGUGGAGCGUACUCAGCAAACCGCCGGAGGGCGGUACGGUUUUA-UGACUGUGA----GCGGAUGUUGUUGCUGA------UGGCGCCG
((.(((..(((((((((((.....))).))).((..((((((....))))))((((((...-.))))))..----))....)))))..))).------..)).... ( -36.70)
>DroEre_CAF1 25570 95 - 1
AUGCAGUGGCGGCGAGAUGUGGAGCGAACUCAGCAAACCGCCGGAAGGCGGUACGGUUUUA-UGGCUGUGA----GCGGAUGUUGUUGCUAA------UGGAGCCG
.(.((.(((((((((.((.(.(((....))).((..((((((....))))))((((((...-.))))))..----))).)).))))))))).------)).).... ( -36.70)
>DroYak_CAF1 26190 95 - 1
AUGCAGUGGCGGCGAGAUGUGGAGCGUACUCAGCAAACCGCCGGAGGGCGGUACGGUUUUA-UGGCUGUGA----GCGGAUGUUGUUGCUGA------UGGAGCCG
...(((..(((((((((((.....))).))).((..((((((....))))))((((((...-.))))))..----))....)))))..))).------........ ( -35.90)
>DroPer_CAF1 33537 95 - 1
---------CGUUGCAAUGUGAAGCGUUUUGAGGAAAUCUCCAGAGAG--GGACAGUCCCAGUGGCAGCGGUGCUGCUGCUGUUGUUGCAGUUGCGACUGUUGCUG
---------.(((((((((..((((.(((((..(....)..))))).(--((.....)))((..(((((...)))))..))))).)..)).)))))))........ ( -33.50)
>consensus
AUGCAGUGACGGCGAGAUGUGGAGCGUACUCAGCAAACCGCCGGAGGGCGGUACGGUUUUA_UGACUGUGA____GCGGAUGUUGUUGCUGA______UGGCGCCG
...(((..(((((((((((.....))).))).((..((((((....))))))((((((.....))))))......))....)))))..)))............... (-22.41 = -24.25 +   1.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:59 2006