Locus 7925

Sequence ID X_DroMel_CAF1
Location 19,732,039 – 19,732,136
Length 97
Max. P 0.789381
window13005

overview

Window 5

Location 19,732,039 – 19,732,136
Length 97
Sequences 4
Columns 104
Reading direction forward
Mean pairwise identity 83.49
Mean single sequence MFE -30.28
Consensus MFE -21.92
Energy contribution -22.30
Covariance contribution 0.38
Combinations/Pair 1.10
Mean z-score -1.85
Structure conservation index 0.72
SVM decision value 0.58
SVM RNA-class probability 0.789381
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19732039 97 + 22224390
-------CACAAGUACGACACAACUAGCUAUAAACUAGCUAGCUUCUCAGCACAACUUAUUGUGCGUGACGUCAGCGUUCUACGUGCUGCGUGCUACGUGCCGA
-------.....(((((.(((..(((((((.....))))))).......((((((....)))))))))(((.(((((.......))))))))....)))))... ( -32.70)
>DroSec_CAF1 27882 104 + 1
CUCCUUUCAAAAGUACGGCACAACUGGCUAUAAAAUAGCUAGCUUCUCAACACAGCUUAUUGUGCGUGACGUCAGCGUUCUACGUGCUGCGUGCUACGUGCCGA
...............((((((..((((((((...))))))))...........(((.....(..(((((((....))))..)))..).....)))..)))))). ( -33.30)
>DroSim_CAF1 4794 104 + 1
CUCCUUUCAAAAGAACGACACAACUGGCUAUAAACUAGCUAGCUUCGCAGCACAACUUAUGGUGCGUGACGUCAGCGUUCUACGUGCUGCGUGCUACGUGCCGA
...............((.(((....(((((.....)))))(((..((((((((.....(((.((((...)).)).))).....)))))))).)))..))).)). ( -31.40)
>DroEre_CAF1 24310 95 + 1
CUUCUUUUAAAAGUCAGAAACAACUGGCUAUAAACUAGCUAGGUUGUCAG---------CUGUGCGUGACGUCAGCGUUCUACGUGCUAUGUGCUACGUGCCGA
...............(((((((((((((((.....)))))).)))))..(---------(((.(((...))))))).))))((((((.....)).))))..... ( -23.70)
>consensus
CUCCUUUCAAAAGUACGACACAACUGGCUAUAAACUAGCUAGCUUCUCAGCACAACUUAUUGUGCGUGACGUCAGCGUUCUACGUGCUGCGUGCUACGUGCCGA
...........((((((......(((((((.....)))))))...................(..(((((((....))))..)))..)..))))))......... (-21.92 = -22.30 +   0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:58 2006