Locus 7922

Sequence ID X_DroMel_CAF1
Location 19,722,777 – 19,722,878
Length 101
Max. P 0.865947
window13000

overview

Window 0

Location 19,722,777 – 19,722,878
Length 101
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 67.47
Mean single sequence MFE -27.18
Consensus MFE -10.20
Energy contribution -11.28
Covariance contribution 1.08
Combinations/Pair 1.37
Mean z-score -2.01
Structure conservation index 0.38
SVM decision value 0.85
SVM RNA-class probability 0.865947
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19722777 101 + 22224390
AUCCGAUAUCCUUUCAUGAAUGCCAAUGUGUGUGCGUGAUUAAAUCCGCACCAUGUGGACGCUCGGAACAUUUGGUAUAU------------GUGC--AUACAUACAUAUAUAUC
.(((((..(((...((((.((((....))))(((((.(((...)))))))))))).)))...)))))......(((((((------------(((.--.......)))))))))) ( -28.60)
>DroSec_CAF1 18898 91 + 1
AUCCGUUAUCCUUUCAUGACUGCCAAUGUGUGUGCGUGAUUAAAUCCGCACCAUGUGGACGCUCGGAACAUUUGGUAUAU------------GUGC--AU----------AUAUC
.((((((((......)))))..(((.((((.(((((.(((...)))))))))))))))......)))......(((((((------------....--))----------))))) ( -22.70)
>DroEre_CAF1 15652 111 + 1
AUCCGAUAUCCUUUCAUGAAUGCGAACGUGUGUGCGUGAUUAAAUCCGCACCAUAUGGACGCUCGGAACAGUUGGUAUAUGUAUGUACAUAUAUGUACAUAUGUA----CAUAUC
.(((((....(......)...(((..((((((((((.(((...))))))).))))))..)))))))).............((((((((((((......)))))))----))))). ( -34.50)
>DroYak_CAF1 15717 97 + 1
AUCCGAUAUUCUUUCAUGAAUGCCAACGUGUGUGCGUGAUUAAAUCCGCACCAUGUGCACGCUCGGAACAGUUGGUAUAU------------AUGU--AUAUGUA----CUUAUC
.(((((.((((......))))((..(((((.(((((.(((...)))))))))))))....)))))))......(((((((------------(...--.))))))----)).... ( -28.50)
>DroAna_CAF1 27710 81 + 1
AGCACCCCUAGUACCCUCAGUGCCCCUGAGUCCUUCAGUUGAAAGCCGCACCAUUUGGAGUGAUGUGGCAGUUGGCAU----------------------------------AUC
...............(((((.....))))).......((..(..((((((.(((.....))).))))))..)..))..----------------------------------... ( -21.60)
>consensus
AUCCGAUAUCCUUUCAUGAAUGCCAAUGUGUGUGCGUGAUUAAAUCCGCACCAUGUGGACGCUCGGAACAGUUGGUAUAU____________AUGC__AUA__UA_____AUAUC
...................((((((((...(.((.(((......(((((.....)))))))).)).)...))))))))..................................... (-10.20 = -11.28 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:54 2006