Locus 7921

Sequence ID X_DroMel_CAF1
Location 19,715,380 – 19,715,488
Length 108
Max. P 0.644688
window12999

overview

Window 9

Location 19,715,380 – 19,715,488
Length 108
Sequences 3
Columns 108
Reading direction reverse
Mean pairwise identity 64.29
Mean single sequence MFE -26.03
Consensus MFE -10.60
Energy contribution -12.17
Covariance contribution 1.57
Combinations/Pair 1.26
Mean z-score -2.24
Structure conservation index 0.41
SVM decision value 0.23
SVM RNA-class probability 0.644688
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19715380 108 - 22224390
UGUUGGGCAACCAAUUGAAAAAUGUCGAAAGUACGCUGUGCUAUUGCAGUCAUCGAUAAUAUCGAUAUCGAAUAUCGUUGCUUUUGCAGCACUCUUGACCAGAUUUUA
.(((((....)))))........(((((.(((..(((((......)))))..((((((.......)))))).....(((((....)))))))).)))))......... ( -29.00)
>DroSec_CAF1 11624 89 - 1
UGUUG-----------------UGUCGACAGUACGG-AAGCUAUCGCAGUUACCGAUAAUAUCGAUACUG-UCAUCGCUGCUGUUGCAGCACUCUUGACCGGAUUUUA
..(((-----------------.(((((((((((((-.(..(((((.......))))).).))).)))))-))...(((((....)))))......))))))...... ( -27.80)
>DroYak_CAF1 8450 97 - 1
UAUU-UGUCGCCAAUUGAAUAAUGUCAA-UUUGCGC-AAGCUAUCGAAGUCAUCGAUAAUAUCGAUACUU-UAAUCGGUGCUUUUGUU-UAUUUUU------AUUUCA
...(-((.(((.((((((......))))-)).))))-))((.((((((((.((((((...))))))))).-...))))))).......-.......------...... ( -21.30)
>consensus
UGUUG_G___CCAAUUGAA_AAUGUCGA_AGUACGC_AAGCUAUCGCAGUCAUCGAUAAUAUCGAUACUG_UAAUCGCUGCUUUUGCAGCACUCUUGACC_GAUUUUA
.......................(((((.(((..............((((.((((((...))))))))))......(((((....)))))))).)))))......... (-10.60 = -12.17 +   1.57)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:53 2006