Locus 7919

Sequence ID X_DroMel_CAF1
Location 19,709,676 – 19,709,772
Length 96
Max. P 0.577030
window12995

overview

Window 5

Location 19,709,676 – 19,709,772
Length 96
Sequences 4
Columns 112
Reading direction forward
Mean pairwise identity 86.70
Mean single sequence MFE -25.19
Consensus MFE -21.68
Energy contribution -21.93
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.41
Structure conservation index 0.86
SVM decision value 0.09
SVM RNA-class probability 0.577030
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19709676 96 + 22224390
CGAAUUUUUAGUUCGCAUUUAGACGUCGACGGCAACGGAGACUGAGAAACUGAGAAACUGAGGAGCCGA----------------GAAACUGAGAAAGUGCGAGACUGAGCA
......((((((((((((((....(((..((....))..)))...............((.((.......----------------....)).)).)))))))).)))))).. ( -25.10)
>DroSec_CAF1 5748 96 + 1
CGAAUUUUUAGUUCGCAUUUAGACGUCGACGGCAACGGAGACUGAGAAACUGAGAAGCCGAGAAACUGA----------------GAAACUGAGAAAGUGCGAGACUGAGCA
......((((((((((((((....(((..((....))..))).......((.((...(((......)).----------------)...)).)).)))))))).)))))).. ( -24.40)
>DroEre_CAF1 3174 96 + 1
CGGAUUUUUAGUUCGCAUUUAGACGUCGACGGCAACGGAGACUGAAAAGCCGAGAAUCUGAGAAACCGA----------------GAAACUGAGAAAGUGCGAGACUGAGCA
......((((((((((((((....(((..((....))..)))..............(((.((.......----------------....)).))))))))))).)))))).. ( -25.20)
>DroYak_CAF1 2926 112 + 1
CGGAUUUUUAGUUCGCAUUUAGACGUCGACGGCAACGGAGACUGAGAAGCCGAGAAACUGAGAAAUCGAGAAACUGAGAAAACGAGAAACUGAGAAAGUGCGAGACUGAGCA
......((((((((((((((....(((..((....))..)))...............((.((...(((..............)))....)).)).)))))))).)))))).. ( -26.04)
>consensus
CGAAUUUUUAGUUCGCAUUUAGACGUCGACGGCAACGGAGACUGAGAAACCGAGAAACUGAGAAACCGA________________GAAACUGAGAAAGUGCGAGACUGAGCA
......((((((((((((((....(((..((....))..)))...............((.((...........................)).)).)))))))).)))))).. (-21.68 = -21.93 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:50 2006