| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,707,379 – 19,707,486 |
| Length | 107 |
| Max. P | 0.998998 |
| Location | 19,707,379 – 19,707,486 |
|---|---|
| Length | 107 |
| Sequences | 4 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 69.84 |
| Mean single sequence MFE | -32.88 |
| Consensus MFE | -17.10 |
| Energy contribution | -15.97 |
| Covariance contribution | -1.13 |
| Combinations/Pair | 1.48 |
| Mean z-score | -2.78 |
| Structure conservation index | 0.52 |
| SVM decision value | 3.32 |
| SVM RNA-class probability | 0.998998 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19707379 107 + 22224390 -UUUUUUUGACGAAGGAGGAAGUUUCGUUGGGGUUGCGAAAGCAGUCUGUGGAUGAAAUUAGUUAUUAAAUAGGCGCACAGAUGAGUGCGGAUUGGCGAUGUCCUU-UG -.........(((((((.(.(((((((((.((..(((....)))..))...)))))))))..............(((((......))))).........).)))))-)) ( -32.00) >DroSec_CAF1 3739 101 + 1 ----UUUUGCCGAAG---GAAGUUUCGUUGGGGUUGCGAAAGCAAUCUGGGGCUGAAAUUAGUUAUUAAAUAGGCGCACAGAUGAGUGCGGAUUGGCGAUGUCCUU-UG ----......(((((---((....((((..(((((((....))))))...(((((....)))))..........(((((......)))))..)..))))..)))))-)) ( -34.10) >DroYak_CAF1 872 106 + 1 UUCUUUUUGGCGGAG---GAAGUUUAGUUGGGGUUGCGAAAGCAGUCUGUGGCUGGGAUUAGUUAUUAAAUAGGCGCACAGAUGUGUGCGGAUUGGCGAUGUCCUUUUG ((((((......)))---)))...((((((.((((((....)))).)).))))))((((..((((....((..((((((....))))))..))))))...))))..... ( -30.70) >DroPer_CAF1 4259 89 + 1 --AAAAU---UGGAA---GGGGUCUC----GGGU--CGAACGGGAUUUUGGGUCGAGAUUAGUUAUUAGGCAGGGGGGGGGCUGCCUGCC------CGAUGGCUUGGUG --...((---..(..---..((((((----((.(--((((......))))).)))))))).(((((..((((((.((....)).))))))------..))))))..)). ( -34.70) >consensus ___UUUUUG_CGAAG___GAAGUUUCGUUGGGGUUGCGAAAGCAAUCUGGGGCUGAAAUUAGUUAUUAAAUAGGCGCACAGAUGAGUGCGGAUUGGCGAUGUCCUU_UG ..........((........(((((((...(((((((....))))))).....)))))))..............(((((......)))))......))........... (-17.10 = -15.97 + -1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:47 2006