| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,706,228 – 19,706,336 |
| Length | 108 |
| Max. P | 0.592091 |
| Location | 19,706,228 – 19,706,336 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 80.07 |
| Mean single sequence MFE | -40.40 |
| Consensus MFE | -24.59 |
| Energy contribution | -24.78 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.592091 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19706228 108 + 22224390 GCGCCUAUCCGCCGCCGUCCAGUGUCGGCAUGCCGCCGCCCACUUUGGGAGGCGGGUCGAGCGCCUUCUGCGCCCCCAGUCCGCUCCACCAUCACCAGCAUCAGCACC ((...........((((........))))((((((((.(((.....))).))))(((.(((((....(((......)))..))))).))).......))))..))... ( -39.50) >DroVir_CAF1 466 103 + 1 GCGCAUAUCCGCCACCCCCGCCCGCCGGA---CCACCGCCAACACUAGGCGGCGGCUCAAGUGCAUUCUGUGCGCCCAAUCCCCAUCAUCAUCAUCAGCAGCAUCA-- (((((((.....(((....(((.(((((.---...))(((.......)))))))))....))).....)))))))...............................-- ( -27.80) >DroSec_CAF1 2900 108 + 1 GCGCCUAUCCGCCGCCGUCUAGCGUCGGCAUGCCGCCGCCCACUUUGGGAGGCGGGUCGAGCGCCUUCUGCGCCCCCAGUCCGCUCCACCAUCACCAGCAUCAGCACC ((........((((.((.....)).))))((((((((.(((.....))).))))(((.(((((....(((......)))..))))).))).......))))..))... ( -42.20) >DroYak_CAF1 479 106 + 1 GCGCCUAUCCGCCGCCCUCCAGCGUGGGCAUGCCGCCGCCCACUUUGGGAGGCGGGUCGAGCGCCUUCUGCGCCCCCAGUCCGCUCCACCAUCACCAGCACCAGCA-- (((......)))((((..((((.((((((........)))))).))))..))))(((.(((((....(((......)))..))))).))).......((....)).-- ( -44.00) >DroMoj_CAF1 475 103 + 1 GUGCAUAUCCGCCGCCGCCGCCCGCCGGA---GUGCCACCGACACUGGGCGGCGGCUCGAGCGCCUUCUGUGCGCCCAAUCCCCAUCAUCAUCAUCAGCAGCACCA-- ((((.........(((((((((((.(((.---......)))....)))))))))))..(.(((((....).)))).).......................))))..-- ( -40.60) >DroAna_CAF1 160 108 + 1 GCGCCUAUCCGCCGCCCCCCAGUGUGGGCGUGCCCCCGCCCACAUUGGGCGGUGGGUCGAGCGCCUUCUGCGCCCCCAGUCCCCAUCAUCAUCACCAGCACCAGCACC (((((.(((((((((((...((((((((((......))))))))))))))))))))).).))))...(((......)))..................((....))... ( -48.30) >consensus GCGCCUAUCCGCCGCCCCCCAGCGUCGGCAUGCCGCCGCCCACAUUGGGAGGCGGGUCGAGCGCCUUCUGCGCCCCCAGUCCCCACCACCAUCACCAGCACCAGCA__ ((....(((((((((((.(....).)))).........(((.....))).)))))))...((((.....))))........................))......... (-24.59 = -24.78 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:46 2006