| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,704,794 – 19,704,954 |
| Length | 160 |
| Max. P | 0.972179 |
| Location | 19,704,794 – 19,704,914 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.31 |
| Mean single sequence MFE | -44.85 |
| Consensus MFE | -36.11 |
| Energy contribution | -36.55 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.81 |
| SVM decision value | 1.34 |
| SVM RNA-class probability | 0.943722 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19704794 120 + 22224390 AAGACGGCCUUCACCGAGGAGCUGAUCGGCGACUACAAGGGCAUCCUGGCCAGAAAGCGCAUGGCCAGCCUGAAUGCCAGCGCCAUUGUGGCGGCCACCUACGAGGUGGAGCGUCACUUG ..((((((((((...)))).)))).))((((.((.....(((((((((((((.........)))))))...).)))))))))))...((((((.(((((.....)))))..))))))... ( -51.20) >DroSim_CAF1 11108 120 + 1 AAGACGGCCUUCACCGAGGAGCUGAUCGGCGACUACAAGGGAAAGGUGGCCAGAAAGCGCAUGGCCAGCCUGAAUGCCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN .....(((.(((.((.((..(((....)))..))....))...(((((((((.........)))))).)))))).))).......................................... ( -29.40) >DroEre_CAF1 11726 120 + 1 AAAACAGCCUUCACCGAGGAGCUGAUCGGGGACUACAAGGGCAUCCUGGCCAGAAAGCGCAUGGCCAGCCUGAAUGCUAGCGCCAUUGUGGCGGCCACCUACGAGGUGGAGCGCCACCUG ....((((((((...)))).))))...((.(.(((((.((((....((((((.........))))))))))...)).)))).))...((((((.(((((.....)))))..))))))... ( -49.60) >DroYak_CAF1 8443 120 + 1 AAGACGGCCUUCACCGAGGAGCUGAUCGGGGACUACAAGGGCAUCCUGGCCAGAAAGCGCAUGGCCAGCCUGAAUGCCAGCGCCAUUGUGGCGGCCACCUACGAGGUGGAGCGUCACCUG ..((((((((((...)))).)))).))((((((......(((((((((((((.........)))))))...).))))).(((((.....)))..(((((.....))))).))))).))). ( -49.20) >consensus AAGACGGCCUUCACCGAGGAGCUGAUCGGCGACUACAAGGGCAUCCUGGCCAGAAAGCGCAUGGCCAGCCUGAAUGCCAGCGCCAUUGUGGCGGCCACCUACGAGGUGGAGCGUCACCUG .....(((.(((.((((........)))).........((((....((((((.........))))))))))))).))).........((((((.(((((.....)))))..))))))... (-36.11 = -36.55 + 0.44)
| Location | 19,704,834 – 19,704,954 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 97.22 |
| Mean single sequence MFE | -50.63 |
| Consensus MFE | -51.01 |
| Energy contribution | -50.57 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.31 |
| Structure conservation index | 1.01 |
| SVM decision value | 1.69 |
| SVM RNA-class probability | 0.972179 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19704834 120 + 22224390 GCAUCCUGGCCAGAAAGCGCAUGGCCAGCCUGAAUGCCAGCGCCAUUGUGGCGGCCACCUACGAGGUGGAGCGUCACUUGGACAAGAAUUUGGCCAGCGAUUGCAGCAGUUUCGAGAGCU ((((((((((((((..((((.((((..........))))))))((..((((((.(((((.....)))))..)))))).))........))))))))).)).)))(((..........))) ( -51.10) >DroEre_CAF1 11766 120 + 1 GCAUCCUGGCCAGAAAGCGCAUGGCCAGCCUGAAUGCUAGCGCCAUUGUGGCGGCCACCUACGAGGUGGAGCGCCACCUGGAUAAGAAUUUGGCCAGUGAUUGCAGCAGUUUCGAGAGCU ((((((((((((((..((((.((((..........))))))))....((((((.(((((.....)))))..))))))...........))))))))).)).)))(((..........))) ( -50.60) >DroYak_CAF1 8483 120 + 1 GCAUCCUGGCCAGAAAGCGCAUGGCCAGCCUGAAUGCCAGCGCCAUUGUGGCGGCCACCUACGAGGUGGAGCGUCACCUGGACAAGAAUUUGGCCAGUGAUUGCAGCAGUUUCGAGAGCU ((((((((((((((..((((.((((..........))))))))....((((((.(((((.....)))))..))))))...........))))))))).)).)))(((..........))) ( -50.20) >consensus GCAUCCUGGCCAGAAAGCGCAUGGCCAGCCUGAAUGCCAGCGCCAUUGUGGCGGCCACCUACGAGGUGGAGCGUCACCUGGACAAGAAUUUGGCCAGUGAUUGCAGCAGUUUCGAGAGCU ((((((((((((((..((((.((((..........))))))))((..((((((.(((((.....)))))..)))))).))........))))))))).)).)))(((..........))) (-51.01 = -50.57 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:42 2006