| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,704,234 – 19,704,354 |
| Length | 120 |
| Max. P | 0.569885 |
| Location | 19,704,234 – 19,704,354 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 95.28 |
| Mean single sequence MFE | -56.92 |
| Consensus MFE | -48.71 |
| Energy contribution | -50.27 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.569885 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19704234 120 - 22224390 GCGGCUGCUGCGUCGCCUUGGACAGGCCCAGCUCAUGGGCCGUCCGGGAUUCGUUCUCGUACAGACACUGCACCUUGGCCAGCGCGUUGAGCGACGCCAUCCGGUGUCGCUUGGGCCCAC (.(((....((((.(((..((...((((((.....))))))((.(((((.....))))).))..........))..)))..)))).(..(((((((((....)))))))))..))))).. ( -57.70) >DroSim_CAF1 10548 120 - 1 GCGGCUGCUGCGUCGCCUUGGACAGGCCCAGCUCAUGGGCCGUCCGGGAUUCGUUCUCGUACAGGCACUGCACCUUGGCCAGCGCGUUGAGCGACGCCAUCCGGUGUCGCUUGGGCCCAC (((((((.((((..((((.((((.((((((.....))))))))))((((.....))))....))))..))))...))))).))((.(..(((((((((....)))))))))..))).... ( -60.90) >DroEre_CAF1 11172 120 - 1 GCGGCUGCUGCGUCGCCUUGGACAGGCCCAGCUCAUGGGCCGUCCGGGAUUCGUUCUCGUACAGGCACUGCACCUUGGCCAGCGCAUUUAGCGAGGCCAUCCGGUGGCGCUUGGGCCCAC (.((((...(((((((((.((((.((((((.....))))))))))((((.....))))....)))).....(((.(((((..(((.....))).)))))...))))))))...))))).. ( -58.60) >DroYak_CAF1 7883 120 - 1 GUGGCUGCUGCGUCGCCUUCGAAAGGCCCAGCUCAUGGGCCGUCCGGGAUUCGUUCUCGUAUAGGCACUGCACCUUGGCCAGCGCAUUUAGCGAGGCCAUCCGAUGGCGCUUGGGCCCAC (.((((...(((((((((......((((((.....))))))...(((((.....)))))...)))).........(((((..(((.....))).)))))......)))))...))))).. ( -50.50) >consensus GCGGCUGCUGCGUCGCCUUGGACAGGCCCAGCUCAUGGGCCGUCCGGGAUUCGUUCUCGUACAGGCACUGCACCUUGGCCAGCGCAUUGAGCGACGCCAUCCGGUGGCGCUUGGGCCCAC (.((((..(((((.(((..((...((((((.....))))))((((((((.....)))))....)))......))..)))..))))).(((((((((((....)))))))))))))))).. (-48.71 = -50.27 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:40 2006