Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,193,299 – 2,193,405 |
Length | 106 |
Max. P | 0.999872 |
Location | 2,193,299 – 2,193,405 |
---|---|
Length | 106 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 67.34 |
Mean single sequence MFE | -29.51 |
Consensus MFE | -22.60 |
Energy contribution | -23.27 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -1.85 |
Structure conservation index | 0.77 |
SVM decision value | 4.33 |
SVM RNA-class probability | 0.999872 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2193299 106 + 22224390 AAGCCGCAAGUGGGGGGCGCCUCAGGUCCACCUCCCACUACAACCACCCAGUACACACACACACACCAUCCCCAGCCCC-CUCCCACCA-------------ACACUUCCCACGCGGCAG ..(((((.(((((((((.(((...)))...)))))))))...........((......))...................-.........-------------...........))))).. ( -27.90) >DroSec_CAF1 6229 90 + 1 AAGCCGCAAGUGGGGGGCGCCUCAGGUCCAACUCCCACUACAACCGCGCAGUGCGAACC----------------CCCU-CCCCCACAG-------------UCACUUCCCACGCUGCAG ..((.((..(((((((((((....(((...............))))))).((....)).----------------....-))))))).(-------------(........)))).)).. ( -25.56) >DroEre_CAF1 6332 119 + 1 AAGCCGCAAGUGGGGGGCGCCUCAGGUCUGCCUCCCACUACAAGCAC-CAGAACAGCCCAGCUCCCAGCCCCCAGUCCCCCAUCCGCCAAUCCCCCGAGCCCCCACUUCCCACGCGGCAG ..((((((((((((((((...((.(((((.............)).))-).))...)))).((((................................)))).))))))).....))))).. ( -35.07) >consensus AAGCCGCAAGUGGGGGGCGCCUCAGGUCCACCUCCCACUACAACCAC_CAGUACAAACC__C_C_C___CCCCAGCCCC_CACCCACCA_____________ACACUUCCCACGCGGCAG ..(((((.(((((((((.(((...)))...)))))))))...........(......).......................................................))))).. (-22.60 = -23.27 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:53 2006