Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,697,431 – 19,697,524 |
Length | 93 |
Max. P | 0.603782 |
Location | 19,697,431 – 19,697,524 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 81.91 |
Mean single sequence MFE | -39.47 |
Consensus MFE | -29.42 |
Energy contribution | -30.48 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.22 |
Mean z-score | -1.41 |
Structure conservation index | 0.75 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.603782 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19697431 93 - 22224390 CAGACGACCGGCUGCCGCUUAGCUGCAAGCUGGCGGCGAUUCUGGGCGUGAGGCAACUCAGCGCCAGGCGGCAGAA---UCUGUUGCGUGGCAUGA .......((((.(((((((.(((.....))))))))))...))))((.((((....))))))((((.(((((((..---.))))))).)))).... ( -47.40) >DroSec_CAF1 3912 93 - 1 CGGACGCCCGGCUACCGCUUAGCUGCAAGCUGGCGGCAAUUCUGGGCGUGAGGCAACUCAGCGCCAGGCGGCAGAA---CCUGUUGCGCGGCAUGA ...((((((((...(((((.(((.....)))))))).....))))))))(((....)))...(((..(((((((..---.)))))))..))).... ( -44.50) >DroSim_CAF1 3082 93 - 1 CGGACGCCCGGCUACCGCUUAGCUGCAAGCUGGCGGCAAUCCUGGGCGUGAGGCAACUCAGCGCCAGGCGGCAGAA---CCUGUUGCGCGGCAUGA ...((((((((...(((((.(((.....)))))))).....))))))))(((....)))...(((..(((((((..---.)))))))..))).... ( -44.50) >DroEre_CAF1 4188 93 - 1 CGGACACCCGGCUACCACUUAGCUGCAAGCUGGCGGCGAUUCUGGGCGUGAGGCAACUCAGCGCCAGGCGUCAGAU---CCUGUUGCGAAGUAUGA (((....)))......((((.((.(((..((((((.(.......((((((((....)))).)))).).))))))..---..))).)).)))).... ( -34.80) >DroYak_CAF1 1700 93 - 1 CAGACGAUCGGCUACCACUUAGCUGCAAGCUGGCGGCAAUUCUGGGCGUGAGGCAACUCAGCGUCAAGCGGCAGUU---ACUGUUGCAAAGCAUGA (((.(...((((((.....))))))...))))...((.......((((((((....)))).))))..(((((((..---.)))))))...)).... ( -32.10) >DroAna_CAF1 15499 93 - 1 AGGACGGCCAUCUGCCGCUGAGCAGCAAACUGGCGGCCAUCCUGAGUGUCCGGCAGCUCAGCAAGCGCCGGCAGGAGUUCCUUUCG---AGCCUGA .((.(.((((..(((.((...)).)))...)))).))).(((((.....(((((.(((.....)))))))))))))((((.....)---))).... ( -33.50) >consensus CGGACGCCCGGCUACCGCUUAGCUGCAAGCUGGCGGCAAUUCUGGGCGUGAGGCAACUCAGCGCCAGGCGGCAGAA___CCUGUUGCGAAGCAUGA ....((.((((((...((......)).))))))))((.......((((((((....)))).))))..(((((((......)))))))...)).... (-29.42 = -30.48 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:33 2006