Locus 7901

Sequence ID X_DroMel_CAF1
Location 19,680,517 – 19,680,628
Length 111
Max. P 0.855277
window12960

overview

Window 0

Location 19,680,517 – 19,680,628
Length 111
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 81.79
Mean single sequence MFE -28.50
Consensus MFE -13.11
Energy contribution -16.47
Covariance contribution 3.36
Combinations/Pair 1.15
Mean z-score -2.64
Structure conservation index 0.46
SVM decision value 0.81
SVM RNA-class probability 0.855277
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19680517 111 + 22224390
UCAUCUUGAAAUGUAUAUUCUAUGUGAUUAUUGUAAUCUAACUACCAUGUAGCUAGUUU--------UUUUCCUAGCUGUUUUGGUUCCAGAGAUCCUACAGUCUAGAUAGGAUAUGCU
............(((((((((((.((...((((((((((....((((..(((((((...--------.....)))))))...)))).....))))..)))))).)).))))))))))). ( -31.70)
>DroSec_CAF1 54322 119 + 1
UCCCCUUGAAAUGUAUAUUGUAUGUAAUUGCUGUAAUCUAACUACCAUGCAGCUAGUUCCACUAACAUUUCCCUAGCUGUUUUGGUACCGGAGAUCCUACAGUCUAGAUAGGAUAUGCU
............(((((((.(((.((...((((((((((...(((((.((((((((................))))))))..)))))....))))..)))))).)).))).))))))). ( -34.69)
>DroSim_CAF1 41253 119 + 1
UCCCCUUGAAAUGCAUAUUGUAUGUAAUUGCUGUUAUCUAACUACCAUGCAGCUAGUUCCACUCACAUUUCCCUAGCUGUUUUGGUUCCGGAGAUCCUACAGUCUAGAUAGGAUAUGCU
............(((((((.(((.((...(((((.((((....((((.((((((((................))))))))..)))).....))))...))))).)).))).))))))). ( -34.99)
>DroEre_CAF1 65547 114 + 1
CCCUCUUGAAAUUAAGAUU----GUAAUUGUUGUAAUCUGACUACCAUGUAGCU-GAUUAACUCAUAUUUCUCUAGCAGUUAUGGUUCCGUAGAUCCUACAGUCAAGAUAUUAUAUGCU
...((((((......(((.----.((((((((((((((.(.((((...))))).-))))).............)))))))))..)))..((((...))))..))))))........... ( -22.01)
>DroYak_CAF1 67790 115 + 1
UCCCCUUGAAAAUAAGAUU----GGAAUUGUUUUAAUCUAACUACCAUGUAACUAGAUCCACUCGCAUUUCUCUAGCUGUUAUAGUUCCAUAGAUCCUACAGUCUAGAUAGGAUAUGCU
...............((.(----(((..........((((..(((...)))..)))))))).))((((.(((((((((((......((....))....)))).)))))...)).)))). ( -19.10)
>consensus
UCCCCUUGAAAUGAAUAUU_UAUGUAAUUGUUGUAAUCUAACUACCAUGUAGCUAGUUCCACUCACAUUUCCCUAGCUGUUUUGGUUCCGGAGAUCCUACAGUCUAGAUAGGAUAUGCU
............(((((((.(((.((...((((((((((....((((..(((((((................)))))))...)))).....))))..)))))).)).))).))))))). (-13.11 = -16.47 +   3.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:19 2006