Locus 7900

Sequence ID	X_DroMel_CAF1
Location	19,679,875 – 19,679,988
Length	113
Max. P	0.901721

overview

Window 9

Location	19,679,875 – 19,679,988
Length	113
Sequences	4
Columns	114
Reading direction	forward
Mean pairwise identity	87.39
Mean single sequence MFE	-26.27
Consensus MFE	-20.97
Energy contribution	-21.84
Covariance contribution	0.87
Combinations/Pair	1.12
Mean z-score	-2.07
Structure conservation index	0.80
SVM decision value	1.02
SVM RNA-class probability	0.901721
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19679875 113 + 22224390
AACACCCAAAAUAUGCAGCCA-AAGUGUCGUACCUCCGAACAUGAGGUGAUCACAAACUUUAUGGUACUUUUCUAUAAAGAGGCUUUCUAAUGGGUACAUAUGUAUGCAUACCU
...(((((........((((.-..(((...((((((.......))))))..)))...((((((((.......)))))))).))))......)))))...((((....))))... ( -31.14)
>DroSec_CAF1 53695 109 + 1
AACACCCAAAAUAUGCAGCCA-AAGUGUCGUACCUCCGAACAUGAGGUGAUCACAAACUUUAUGGUACUUUCCUAUAAAGAGGCUUUCUAAUGGGUACAUAUGUA----UACCU
...(((((........((((.-..(((...((((((.......))))))..)))...((((((((.......)))))))).))))......))))).........----..... ( -29.24)
>DroEre_CAF1 64927 106 + 1
AGCACCCAAAAUAUGCUGCCA-AAGUGUCGUAUCAGCAAACAUGAGGUGAUCACAAGCUUUAUGGUACUUUCUUAUAACGAGGCUGUCUAAUGCGUACAUAU-------UACCU
((((.........))))....-..(((((((((((((...((((((((........)))))))).......(((.....)))))))....))))).))))..-------..... ( -21.10)
>DroYak_CAF1 67161 106 + 1
AACACCCAAAAUAUGCAGCCAAAAGUGUCGUACCUCCAAAUAUGAGGUGAUCACAAACUUUAUGGUACUUUCUUAUAGAGGGGCUUUCUAGUGCGUACUUA--------UACCU
...........(((((((((....(((...((((((.......))))))..)))...((((((((.......)))))))).))).......))))))....--------..... ( -23.61)
>consensus
AACACCCAAAAUAUGCAGCCA_AAGUGUCGUACCUCCAAACAUGAGGUGAUCACAAACUUUAUGGUACUUUCCUAUAAAGAGGCUUUCUAAUGCGUACAUAU_______UACCU
...(((((........((((....(((...((((((.......))))))..)))...((((((((.......)))))))).))))......))))).................. (-20.97 = -21.84 +   0.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:18 2006