Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,191,883 – 2,191,979 |
Length | 96 |
Max. P | 0.947705 |
Location | 2,191,883 – 2,191,979 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.36 |
Mean single sequence MFE | -27.83 |
Consensus MFE | -23.87 |
Energy contribution | -23.43 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.08 |
Mean z-score | -1.83 |
Structure conservation index | 0.86 |
SVM decision value | 1.37 |
SVM RNA-class probability | 0.947705 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2191883 96 - 22224390 CAUAUGUAUGUAGCUUGGAGUCCUCUAAGCGA-GUGAACUUUGUCGCUUUGACGAAGCGGCAGCGUUAAUAGGGAAAAUGAAAAUCAACAAGUGCAU----------------------- ...((((((...(((((((....)))))))..-...(((.((((((((((...)))))))))).)))........................))))))----------------------- ( -26.30) >DroSec_CAF1 4794 96 - 1 CAUAUGUAUGUAGUUUGGAGUCAUCUAAGCGA-GUGAACUUUGUCGCUUUGACGAAGCGGCAGCGUUAAUAGGGAAAAUGAAAAUCAACAAGUGCAU----------------------- ...((((((...(((((((....)))))))..-...(((.((((((((((...)))))))))).)))........................))))))----------------------- ( -23.80) >DroEre_CAF1 4926 116 - 1 ----CGUAUGUAGUUUGGAGUCAUCUAAGCGAUGUGAACUUUGUCGCUUUGACGAGGCGGCAGCGUUAAUAAGGAAAAUGAAAAUCAACAAGUGCAUACACAUGUACAUACGUACAUUUG ----.((((((((((((((....)))))))..(((.(((.((((((((((...)))))))))).))).)))....................((((((....)))))).)))))))..... ( -33.40) >consensus CAUAUGUAUGUAGUUUGGAGUCAUCUAAGCGA_GUGAACUUUGUCGCUUUGACGAAGCGGCAGCGUUAAUAGGGAAAAUGAAAAUCAACAAGUGCAU_______________________ .....((((...(((((((....)))))))......(((.((((((((((...)))))))))).)))........................))))......................... (-23.87 = -23.43 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:52 2006