Locus 7899

Sequence ID X_DroMel_CAF1
Location 19,678,184 – 19,678,283
Length 99
Max. P 0.974140
window12958

overview

Window 8

Location 19,678,184 – 19,678,283
Length 99
Sequences 4
Columns 101
Reading direction reverse
Mean pairwise identity 82.95
Mean single sequence MFE -30.25
Consensus MFE -25.76
Energy contribution -25.57
Covariance contribution -0.19
Combinations/Pair 1.07
Mean z-score -2.28
Structure conservation index 0.85
SVM decision value 1.72
SVM RNA-class probability 0.974140
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19678184 99 - 22224390
CUGUGCGCCACCAAGUGGGCGUGCAGUGGGCCAAUUUGGCUGAUAGAUUGUAUUUCGCCACACAGGCGACGAAGGCGAAGAAGAGAGACAGAAAGAGU--A
(((..((((........))))..)))(.((((.....)))).)....((((.(((((((.....)))(.(....))......)))).)))).......--. ( -30.40)
>DroSec_CAF1 52073 89 - 1
CUGUGCGCCACCAAGUGGGCGUGCAGUGGGCCAAUUUGGCUAAUAGAUUGUAUUUCGCCACACAGGCG------------AAGAGAGACAGAAAGAAAAGA
(((..((((........))))..)))..((((.....))))......((((.(((((((.....))))------------)))....)))).......... ( -31.00)
>DroSim_CAF1 39617 89 - 1
CUGUGCGCCACCAAGUGGGCGUGCAGUGGGCCAAUUUGGCUAAUAGAUUGUAUUUCGCCACACAGGCG------------AAGAGAGACAGAAAGCAGAGA
(((..((((........))))..)))..((((.....))))......((((.(((((((.....))))------------)))....)))).......... ( -31.00)
>DroEre_CAF1 63276 78 - 1
CUGUGCGCCACCAAGUGGGCGUGCAGUGAGCCAAUUUGGCUAAUAGAUUGUAUUUCGCCACACAGGCG------------UGGAGGGA-----------AA
((.((((((.....(((((((((((((.((((.....)))).....))))))...)))).))).))))------------)).))...-----------.. ( -28.60)
>consensus
CUGUGCGCCACCAAGUGGGCGUGCAGUGGGCCAAUUUGGCUAAUAGAUUGUAUUUCGCCACACAGGCG____________AAGAGAGACAGAAAGAA__GA
(((..((((........))))..)))..((((.....))))..............((((.....))))................................. (-25.76 = -25.57 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:17 2006