Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,678,038 – 19,678,151 |
Length | 113 |
Max. P | 0.767132 |
Location | 19,678,038 – 19,678,151 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.22 |
Mean single sequence MFE | -31.64 |
Consensus MFE | -30.58 |
Energy contribution | -30.78 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.15 |
Structure conservation index | 0.97 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.720311 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19678038 113 + 22224390 AAAUGGAUACGGGAAUGGGAAUGGG-----AGUCGCAUUUGAAUUGGGAGCAAGCCAACUGAUUUACAGUGUGACCGAAGGCCCAUUUAACGCAGAGUUCAGUGUGCUAAAUAAUCCC-- ....((((....(((((((..(..(-----.(((((((((((((..(...........)..))))).)))))))))..)..))))))).((((........))))........)))).-- ( -31.20) >DroSec_CAF1 51927 113 + 1 AAAUGGAUACGGGAAUGGGAAUGGG-----AGUCGCAUUUGAAUUGGGAGCAAGCCAACUGAUUUACAGUGUGACCGAAGGCCCAUUUAACGCAGAGUUCAGUGUGCUAAAUAAUCCC-- ....((((....(((((((..(..(-----.(((((((((((((..(...........)..))))).)))))))))..)..))))))).((((........))))........)))).-- ( -31.20) >DroSim_CAF1 39471 113 + 1 AAAUGGAUACGGGAAUGGGAAUGGG-----AGUCGCAUUUGAAUUGGGAGCAAGCCAACUGAUUUACAGUGUGACCGAAGGCCCAUUUAACGCAGAGUUCAGUGUGCUAAAUAAUCCC-- ....((((....(((((((..(..(-----.(((((((((((((..(...........)..))))).)))))))))..)..))))))).((((........))))........)))).-- ( -31.20) >DroEre_CAF1 63125 115 + 1 AAAUGGAUACGGGAAUGGGAAUGGG-----AGUCGCAUUUGAAUUGGGAGCAAGCCAACUGAUUUACAGUGUGACCGAAGGCCCAUUUGACGCAGAGUUCAGUGUGCUAAAUAAUCCCAU ..........((((....(((((((-----.(((((((((((((..(...........)..))))).))))))))(....)))))))).((((........)))).........)))).. ( -32.40) >DroYak_CAF1 65214 120 + 1 AAAUGGAUACGGGAAUGGGAAUGGGAAUGGAGCCGCAUUUGAAUUGGGAGCAAGCCAACUGAUUUACAGUGUGACCGAAGUCCCAUUUAACGCAGAGUUCAGUGUGCUAAAUAAUCCCAU ..........((((....((((((((.(((...(((((((((((..(...........)..))))).)))))).)))...)))))))).((((........)))).........)))).. ( -32.20) >consensus AAAUGGAUACGGGAAUGGGAAUGGG_____AGUCGCAUUUGAAUUGGGAGCAAGCCAACUGAUUUACAGUGUGACCGAAGGCCCAUUUAACGCAGAGUUCAGUGUGCUAAAUAAUCCC__ ..........((((....(((((((......(((((((((((((..(...........)..))))).))))))))......))))))).((((........)))).........)))).. (-30.58 = -30.78 + 0.20)
Location | 19,678,038 – 19,678,151 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.22 |
Mean single sequence MFE | -25.60 |
Consensus MFE | -24.12 |
Energy contribution | -24.32 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.22 |
Structure conservation index | 0.94 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.767132 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19678038 113 - 22224390 --GGGAUUAUUUAGCACACUGAACUCUGCGUUAAAUGGGCCUUCGGUCACACUGUAAAUCAGUUGGCUUGCUCCCAAUUCAAAUGCGACU-----CCCAUUCCCAUUCCCGUAUCCAUUU --((((...(((((....)))))...((((((((.((((.....(((((.((((.....)))))))))....)))).))..))))))...-----.....))))................ ( -24.50) >DroSec_CAF1 51927 113 - 1 --GGGAUUAUUUAGCACACUGAACUCUGCGUUAAAUGGGCCUUCGGUCACACUGUAAAUCAGUUGGCUUGCUCCCAAUUCAAAUGCGACU-----CCCAUUCCCAUUCCCGUAUCCAUUU --((((...(((((....)))))...((((((((.((((.....(((((.((((.....)))))))))....)))).))..))))))...-----.....))))................ ( -24.50) >DroSim_CAF1 39471 113 - 1 --GGGAUUAUUUAGCACACUGAACUCUGCGUUAAAUGGGCCUUCGGUCACACUGUAAAUCAGUUGGCUUGCUCCCAAUUCAAAUGCGACU-----CCCAUUCCCAUUCCCGUAUCCAUUU --((((...(((((....)))))...((((((((.((((.....(((((.((((.....)))))))))....)))).))..))))))...-----.....))))................ ( -24.50) >DroEre_CAF1 63125 115 - 1 AUGGGAUUAUUUAGCACACUGAACUCUGCGUCAAAUGGGCCUUCGGUCACACUGUAAAUCAGUUGGCUUGCUCCCAAUUCAAAUGCGACU-----CCCAUUCCCAUUCCCGUAUCCAUUU ((((((...(((((....)))))...(((((.((.((((.....(((((.((((.....)))))))))....)))).))...)))))...-----...........))))))........ ( -24.60) >DroYak_CAF1 65214 120 - 1 AUGGGAUUAUUUAGCACACUGAACUCUGCGUUAAAUGGGACUUCGGUCACACUGUAAAUCAGUUGGCUUGCUCCCAAUUCAAAUGCGGCUCCAUUCCCAUUCCCAUUCCCGUAUCCAUUU ((((((...(((((....)))))..(((((((((.(((((....(((((.((((.....)))))))))...))))).))..)))))))..................))))))........ ( -29.90) >consensus __GGGAUUAUUUAGCACACUGAACUCUGCGUUAAAUGGGCCUUCGGUCACACUGUAAAUCAGUUGGCUUGCUCCCAAUUCAAAUGCGACU_____CCCAUUCCCAUUCCCGUAUCCAUUU ..((((...(((((....)))))...((((((((.((((.....(((((.((((.....)))))))))....)))).))..)))))).............))))................ (-24.12 = -24.32 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:16 2006