Locus 7897

Sequence ID X_DroMel_CAF1
Location 19,677,242 – 19,677,351
Length 109
Max. P 0.956976
window12955

overview

Window 5

Location 19,677,242 – 19,677,351
Length 109
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 80.21
Mean single sequence MFE -24.92
Consensus MFE -14.78
Energy contribution -14.62
Covariance contribution -0.16
Combinations/Pair 1.22
Mean z-score -2.45
Structure conservation index 0.59
SVM decision value 1.47
SVM RNA-class probability 0.956976
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19677242 109 + 22224390
GAGCAAGCCCGUCGUACCCUUGUACCCUUGUAGUACCACUGC---------CAGUGCUACCAUAUGUACAUACAUACAUCAACAUCAAUCACUUGUUGAUACUGCAAAGUGCAGUGUA
.............(((....(((((....(((((((......---------..))))))).....)))))....)))(((((((.........)))))))(((((.....)))))... ( -26.50)
>DroSec_CAF1 51170 92 + 1
GAGCAAGCACUCAGUACCGCUG--CCCU-------CCAUUGC---------CAGUGCUACCAUAUGCA--------CAUCAACAUCAAUCACUUGUUGAUACUGCAAAGUGCAGUGUA
(((......))).....(((((--(.((-------...((((---------..((((........)))--------)(((((((.........)))))))...)))))).)))))).. ( -26.30)
>DroSim_CAF1 38712 92 + 1
GAGCAGGCACUCAGUACCGCUG--CCCU-------CCACUGC---------CAGUGCUACCAUAUGCA--------CAUCAACAUCAAUCACUUGUUGAUACCGCAAAGUGCAGUGUA
(((..(((((........).))--))))-------)((((((---------(.((((........)))--------)(((((((.........)))))))........).)))))).. ( -27.10)
>DroEre_CAF1 62396 99 + 1
GGGCCAGCACUCAGUACCCUUG--CCCU-------CCAAUGCUUCCUCAACCA--GCUACCAUAUGCA--------CAUCAACAUCAAUCACUUGUUGAUACUGCAAAGUGCAGUGUA
((((.((...........)).)--))).-------..................--((........)).--------.(((((((.........)))))))(((((.....)))))... ( -20.40)
>DroYak_CAF1 64451 100 + 1
GAGCAAACCCUCGGUGCCC-UG--CCCU-------CCACUGCCUCCUCAACCAGAGCUACCAUAUGCA--------CAUCAACAUCAAUUACUUGUUGAUACUGCAAAGUGCAGUGUA
(((......)))(((....-.)--))..-------.((((((((.(((.....)))........((((--------.(((((((.........)))))))..)))).)).)))))).. ( -24.30)
>consensus
GAGCAAGCACUCAGUACCCCUG__CCCU_______CCACUGC_________CAGUGCUACCAUAUGCA________CAUCAACAUCAAUCACUUGUUGAUACUGCAAAGUGCAGUGUA
(((......)))........................((((((.............((........))..........(((((((.........)))))))..........)))))).. (-14.78 = -14.62 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:14 2006