Locus 7894

Sequence ID X_DroMel_CAF1
Location 19,675,141 – 19,675,242
Length 101
Max. P 0.791654
window12951

overview

Window 1

Location 19,675,141 – 19,675,242
Length 101
Sequences 4
Columns 109
Reading direction forward
Mean pairwise identity 92.20
Mean single sequence MFE -16.97
Consensus MFE -14.07
Energy contribution -14.07
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.84
Structure conservation index 0.83
SVM decision value 0.59
SVM RNA-class probability 0.791654
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19675141 101 + 22224390
CACACACAAGAGUGGACAAAAAGCAACACUAGCGGGCAAACAGAAAAUAAAUUAAUACAUUAAAUUUAACUUUUAAUGGGCCCCAUUC--------ACACACACAGCCA
.........(((((........((.......))((((....................(((((((.......))))))).)))))))))--------............. ( -15.70)
>DroSec_CAF1 49249 109 + 1
GACACACAAGAGUGGACAAAAGGCAACACUGGCGGGCAAACAGAAAAUAAAUGAAUACAUUAAAUUUAACUUUUAAUGGGCCCCAUUCCCAUUCACACACACACAGCCA
.........((((((......(....)....(.((((...((.........))....(((((((.......))))))).)))))....))))))............... ( -20.60)
>DroEre_CAF1 60379 99 + 1
CACACACAAGAGUGGACAAAAAGCAACACUGGCGGGCAAACAGAAAAUAAAUUAAUACAUUAAAUUUAACUUUUAAUGGGCCCCAUUC----------ACACACAGUCA
..(((......)))(((.....((.......))((((....................(((((((.......))))))).)))).....----------.......))). ( -16.00)
>DroYak_CAF1 62417 99 + 1
AACACACAAGAGUGGACAAAAAGCAACACUGGCGGGCAAACAGAAAAUAAAUUAAUACAUUAAAUUUAACUUUUAAUGGGCCCCAUUC----------ACACACAGCCA
.........(((((........((.......))((((....................(((((((.......))))))).)))))))))----------........... ( -15.60)
>consensus
CACACACAAGAGUGGACAAAAAGCAACACUGGCGGGCAAACAGAAAAUAAAUUAAUACAUUAAAUUUAACUUUUAAUGGGCCCCAUUC__________ACACACAGCCA
.........(((((........((.......))((((....................(((((((.......))))))).)))))))))..................... (-14.07 = -14.07 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:11 2006