Locus 7892

Sequence ID X_DroMel_CAF1
Location 19,666,572 – 19,666,674
Length 102
Max. P 0.956108
window12949

overview

Window 9

Location 19,666,572 – 19,666,674
Length 102
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 90.54
Mean single sequence MFE -18.38
Consensus MFE -15.94
Energy contribution -15.58
Covariance contribution -0.36
Combinations/Pair 1.19
Mean z-score -1.75
Structure conservation index 0.87
SVM decision value 1.46
SVM RNA-class probability 0.956108
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19666572 102 - 22224390
UUCAUUUUGAAAAUCAAAAA--ACUUCUGCGGUACUCGCCUGCGGAAUUAAAUGCAAAAUGCAAA--AUAGGAAUUCUGGCAUUAGUAAAAAUAUUUAAGAUACAU
....(((((.....))))).--(((..((((((....)))..(((((((...(((.....)))..--.....))))))))))..)))................... ( -16.90)
>DroSec_CAF1 40060 102 - 1
UUAAUUUUGAAAAUCAAAAA--ACUUCUGCGGCACUCGCCUGCGGAAUUAAAUGCGAAAUGCAAA--AUAGGAAUCCUGGCAUUAGUAAAAAUAUUUAAGAUACAU
...((((((((.........--..(((((((((....))).)))))).....(((..(((((...--.((((...))))))))).)))......)))))))).... ( -21.60)
>DroSim_CAF1 31775 102 - 1
UUAAUUUUGAAAAUCAAAAA--ACUUCUGCGGCACUGGCCUGCGGAAUUAAAUGCGAAAUGCAAA--AUAGGAAUUCUGGCAUUAGUAAAAAUAUUUAAGAUACAU
...((((((((.........--..(((((((((....))).)))))).....(((..(((((...--...((....)).))))).)))......)))))))).... ( -20.30)
>DroEre_CAF1 52141 104 - 1
UUCAUUUUGAAAAUCGAAAAAAAAAUCUGCGGUACUCACCAGCAAAAUUAAAUGCAAAAUGCAAA--AAAGGAAUUCUGGCAUUAGCAAAAAUAUUUAAAAUACAU
...((((((((................((((((....))).)))........(((..(((((...--...((....)).))))).)))......)))))))).... ( -14.00)
>DroYak_CAF1 54029 104 - 1
UUCAUUUUGAAAAUCGAAAA--AAUUCUGCGGUACUCAACUGCGGAAUGAAAUGCAAAAUGCAAAAAAAAGGAAUUCUGGCAUUAGUAAAAAUAUUUAAGAUACAU
...((((((((.........--.((((((((((.....))))))))))....(((..(((((........((....)).))))).)))......)))))))).... ( -19.10)
>consensus
UUCAUUUUGAAAAUCAAAAA__ACUUCUGCGGUACUCGCCUGCGGAAUUAAAUGCAAAAUGCAAA__AUAGGAAUUCUGGCAUUAGUAAAAAUAUUUAAGAUACAU
...((((((((.............(((((((((....))).)))))).....(((..(((((........((....)).))))).)))......)))))))).... (-15.94 = -15.58 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:09 2006