Locus 7887

Sequence ID X_DroMel_CAF1
Location 19,660,529 – 19,660,625
Length 96
Max. P 0.961838
window12937

overview

Window 7

Location 19,660,529 – 19,660,625
Length 96
Sequences 4
Columns 96
Reading direction forward
Mean pairwise identity 98.96
Mean single sequence MFE -23.83
Consensus MFE -24.01
Energy contribution -23.83
Covariance contribution -0.19
Combinations/Pair 1.03
Mean z-score -2.99
Structure conservation index 1.01
SVM decision value 1.53
SVM RNA-class probability 0.961838
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19660529 96 + 22224390
UUCAUUGGCAUUAUUCCAGCUUCGUCGUCGUCAUCAAUUGAAUUCGUUUCAUUUCGAUUCGUUUGAAUGAAUUUCGCUUUGGACUUUUGCUGAUGU
..(((..(((..(.(((((...((...((((..((((.(((((.((........))))))).))))))))....))..))))).)..)))..))). ( -24.40)
>DroSec_CAF1 33754 96 + 1
UUCAUUGGCAUUAUUCUAGCUUCGUCGUCGUCAUCAAUUGAAUUCGUUUCAUUUCGAUUCGUUUGAAUGAAUUUCGCUUUGGACUUUUGCUGAUGU
..(((..(((..(.(((((...((...((((..((((.(((((.((........))))))).))))))))....))..))))).)..)))..))). ( -22.10)
>DroEre_CAF1 46729 96 + 1
UUCAUUGGCAUUAUUCCAGCUUCGUCGUCGUCAUCAAUUGAAUUCGUUUCAUUUCGAUUCGUUUGAAUGAAUUUCGCUUUGGACUUUUGCUGAUGU
..(((..(((..(.(((((...((...((((..((((.(((((.((........))))))).))))))))....))..))))).)..)))..))). ( -24.40)
>DroYak_CAF1 47139 96 + 1
UUCAUUGGCAUUAUUCCAGCUCCGUCGUCGUCAUCAAUUGAAUUCGUUUCAUUUCGAUUCGUUUGAAUGAAUUUCGCUUUGGACUUUUGCUGAUGU
..(((..(((..(.(((((...((...((((..((((.(((((.((........))))))).))))))))....))..))))).)..)))..))). ( -24.40)
>consensus
UUCAUUGGCAUUAUUCCAGCUUCGUCGUCGUCAUCAAUUGAAUUCGUUUCAUUUCGAUUCGUUUGAAUGAAUUUCGCUUUGGACUUUUGCUGAUGU
..(((..(((..(.(((((...((...((((..((((.(((((.((........))))))).))))))))....))..))))).)..)))..))). (-24.01 = -23.83 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:59 2006