| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,650,863 – 19,650,965 |
| Length | 102 |
| Max. P | 0.805475 |
| Location | 19,650,863 – 19,650,965 |
|---|---|
| Length | 102 |
| Sequences | 4 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 85.24 |
| Mean single sequence MFE | -37.65 |
| Consensus MFE | -26.65 |
| Energy contribution | -27.53 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.805475 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19650863 102 - 22224390 AGAGCUCAUAAGCGCCAACGGCCAAGGCUUUUGGAAAUUAGCGUGGCUGCCAAAUCAGGAACCGGCUUAAGGAGCACCAGGAUUCCGGGA------UUGGGGUGCUAU ..........((((((..((((((..(((..(....)..))).))))))((((.((.((((((.((((...))))....)).)))).)).------)))))))))).. ( -38.90) >DroSec_CAF1 24293 102 - 1 AGAGCUCAUAAGCGCCAUCGGCCAAGGCUUUUGGAAAUUAGCGUGGCUGCCAAAUCAGGAACCGGCUUAAGGAGCACCAGGAUUCCGGGG------UUGGGGUGCUAU ..........((((((..((((((..(((..(....)..))).))))))((((..(.((((((.((((...))))....)).)))).)..------)))))))))).. ( -38.80) >DroSim_CAF1 22667 102 - 1 AGAGCUCAUAAGCGCCAUCGGCCAAGGCUUUUGGAAAUUAGCGUGGCUGCCAAAUCAGGAACCGGCUUAAGGAGCACCAGGAUUCCGGGG------UUGGGGUGCUAU ..........((((((..((((((..(((..(....)..))).))))))((((..(.((((((.((((...))))....)).)))).)..------)))))))))).. ( -38.80) >DroAna_CAF1 43772 106 - 1 AGAGCUCAUAAGCGCCGUUGGCUAAAGCUUUUGGAAAUUAGCGUGGCUUCCAAGCCAGGAUCCGGCUUAAAGGACAC--GGAAGGCAGGGCAACUUCUAGGAGGCUGC ...(((...((...(((..(((....)))..)))...)))))(..((((((..(((....((((.((....))...)--))).)))(((....)))...))))))..) ( -34.10) >consensus AGAGCUCAUAAGCGCCAUCGGCCAAGGCUUUUGGAAAUUAGCGUGGCUGCCAAAUCAGGAACCGGCUUAAGGAGCACCAGGAUUCCGGGG______UUGGGGUGCUAU ..........((((((..((((((..(((..(....)..))).))))))((((.((.((((((.(((.....)))....)).))))..))......)))))))))).. (-26.65 = -27.53 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:56 2006