| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,646,270 – 19,646,388 |
| Length | 118 |
| Max. P | 0.603544 |
| Location | 19,646,270 – 19,646,388 |
|---|---|
| Length | 118 |
| Sequences | 3 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 88.73 |
| Mean single sequence MFE | -24.15 |
| Consensus MFE | -20.54 |
| Energy contribution | -20.43 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.603544 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19646270 118 + 22224390 GUAU-GCCCACGUCCUAUCUCUUAAGCAGUUCAACUCCUGCUUGCUAAAGCAGUUCCCUCUGUUAAAGAUAUUUUGUACGUGGUUCUAUUCGGAACUAUUAUUUUGAAAUUUUUUAAUU ....-..((((((.(.((.((((.(((((........((((((....))))))......))))).)))).))...).)))))).....(((((((......)))))))........... ( -26.34) >DroSec_CAF1 22717 117 + 1 GUCA-UCCUACGUCCUAUCUCUAAAGCAGUUCAACUCCUGCUUGCUAAAGCAGUCCCCUCUGUUAACGAUGUUUUCUACAUGGUUCGUUCCGGAACCAUUAUUUCGAAGUUU-UUGAUU ((((-....(((((.........((((((........)))))).....(((((......)))))...))))).......(((((((......))))))).............-.)))). ( -23.40) >DroSim_CAF1 21127 118 + 1 GUCUUUGCUACGUCCUAUCUCUAAAGCAGUUCAACUCCUGCUUGCUAAAGCAGUCCCCUCUGUUAACGAUGUUUUCUACAUGGUUCUUUCCGGAACCAUUAUUUCGAAAUUU-UUGAUU .........(((((.........((((((........)))))).....(((((......)))))...))))).......((((((((....))))))))....((((.....-)))).. ( -22.70) >consensus GUCU_UCCUACGUCCUAUCUCUAAAGCAGUUCAACUCCUGCUUGCUAAAGCAGUCCCCUCUGUUAACGAUGUUUUCUACAUGGUUCUUUCCGGAACCAUUAUUUCGAAAUUU_UUGAUU .........(((((.........((((((........)))))).....(((((......)))))...))))).......(((((((......))))))).................... (-20.54 = -20.43 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:55 2006