| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,642,943 – 19,643,053 |
| Length | 110 |
| Max. P | 0.910547 |
| Location | 19,642,943 – 19,643,053 |
|---|---|
| Length | 110 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.69 |
| Mean single sequence MFE | -30.27 |
| Consensus MFE | -21.92 |
| Energy contribution | -21.60 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.72 |
| SVM decision value | 1.07 |
| SVM RNA-class probability | 0.910547 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19642943 110 + 22224390 AGUACAUGAAUUUCGACAGCCGUUGUCCUGAGAAAAGGGUUAAAAUAAAAGGGGGUUG------GGCAGCGGC---GGCUGUUGUA-AAAAAGCAAAGAAAAAGUAAAGUAAUUAUUUUG ..........(((((((((((((((((((......)))((...(((........))).------.)).)))))---)))))))).)-))...........(((((((.....))))))). ( -24.30) >DroPse_CAF1 47882 115 + 1 AGUACAUAAAUUUCGACAGCCGUUGUCCCA--AAAAGGGGUAAGCCA---GGGGCCCGGAAGGAGGCAGGGGCCGGGGUUGUUGCGGGAAAACCAAAGAAAAAGUAAAGUAAUUAUUUUG ..(((........((((((((.(.(((((.--......((....)).---..(.(((....)).).).))))).).)))))))).((.....)).........))).............. ( -32.90) >DroPer_CAF1 48848 115 + 1 AGUACAUAAAUUUCGACAGCCGUUGUCCCA--AAAAGGGGUAAGCCA---GGGGCCCGGAAGGAGGCAGGGGCUGGGGUUGUUGCGGGAAAACCAAAGGAAAAGUAAAGUAAUUAUUUUG ..(((........((((((((..(..(((.--....)))..)((((.---..(.(((....)).).)...))))..)))))))).((.....)).........))).............. ( -33.60) >consensus AGUACAUAAAUUUCGACAGCCGUUGUCCCA__AAAAGGGGUAAGCCA___GGGGCCCGGAAGGAGGCAGGGGC_GGGGUUGUUGCGGGAAAACCAAAGAAAAAGUAAAGUAAUUAUUUUG .............((((((((.(.(((((.........((....)).......(((........))).))))).).))))))))................(((((((.....))))))). (-21.92 = -21.60 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:54 2006