Locus 7882

Sequence ID X_DroMel_CAF1
Location 19,640,955 – 19,641,062
Length 107
Max. P 0.789501
window12931

overview

Window 1

Location 19,640,955 – 19,641,062
Length 107
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 75.35
Mean single sequence MFE -44.87
Consensus MFE -34.91
Energy contribution -35.37
Covariance contribution 0.46
Combinations/Pair 1.21
Mean z-score -1.26
Structure conservation index 0.78
SVM decision value 0.58
SVM RNA-class probability 0.789501
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19640955 107 - 22224390
AUGGUGGCGCUGGAGCAGCUGUUCUGGGUGGCCACAGUGGAGCAUUUAGAGUGGACCCAAUGUAACAACGGCUGCUUAGGCUCUGCAUCUUCACCGC--------CUUUCAUCCU-----
..(((((.(..(((((((..((.(((((..(((....((..(((((..(......)..)))))..))..)))..))))))).)))).))).).))))--------).........----- ( -35.70)
>DroPse_CAF1 45572 112 - 1
AUAGA-GGGCAGCAGCAGCUGUUUGGGGCGGCCGCAGUGGGGCAUUUAGAGUGGACCCAAUGUAUCAACGGCUGCUCCG-GGCGGCUCCUGCCCCGUGACUCU------ACUACUCCUUC
.((((-(.((.((((.((((((((((((((((((((.((((.(((.....)))..)))).))......)))))))))))-))))))).))))...))..))))------).......... ( -52.10)
>DroPer_CAF1 46520 119 - 1
AUAGA-GGGCAGCAGCAGCUGUUUGGGGCGGCCGCAGUGGGGCAUUUAGAGUGGACCCAAUGUAUCAACGGCUGCUCCGGGGCGGCUCCUGCCUCGUGACUCUUCCUUUCCUACUCCUUC
..(((-(((((((....)))))).((((((((((((.((((.(((.....)))..)))).))......))))))))))(((((((...)))))))....))))................. ( -46.80)
>consensus
AUAGA_GGGCAGCAGCAGCUGUUUGGGGCGGCCGCAGUGGGGCAUUUAGAGUGGACCCAAUGUAUCAACGGCUGCUCCGGGGCGGCUCCUGCCCCGUGACUCU__CUUUCCUACUCCUUC
......(((..((((.((((((((((((((((((((.((((.(((.....)))..)))).)))......))))))))))).)))))).)))))))......................... (-34.91 = -35.37 +   0.46)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:53 2006