| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,639,817 – 19,639,916 |
| Length | 99 |
| Max. P | 0.576861 |
| Location | 19,639,817 – 19,639,916 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 67.80 |
| Mean single sequence MFE | -27.23 |
| Consensus MFE | -16.22 |
| Energy contribution | -15.67 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.576861 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19639817 99 - 22224390 --AU-CCCAAAGAUGGAUUUGUG--ACCU-GAU---------------GCAUAAGGAAUGGCUUUCCAUUAAUGAGAUUGAUUAUCUUAAUGGCCUCUCAAUCUGCGUUUAUCCCACCAC --..-.(((....)))....(((--....-(((---------------(((....((..((((.........((((((.....))))))..))))..))....)))))).....)))... ( -18.40) >DroPse_CAF1 44027 110 - 1 GUGUCGCUAUAGAUGGAGU------UCCUUGUUGGUCUACCCCGCCUCUUUGAUGGUUUGUCCUUCUAUUGAUGAGAUUGAUUAUCUUAAUGGGCUCUC----UGGCUCCAUCGCAUUAC ...........((((((((------(.......((......))((((.((.(((((((.((((.((....)).).))).)))))))..)).))))....----.)))))))))....... ( -28.60) >DroPer_CAF1 44864 116 - 1 GUGUCGCUAUAGAUGGAGUUGUUGGUCCUUGUUGGUCUCCCCCAUCUCGUUGAUGGUUUGUCCUUCUAUUGAUGAGAUUGAUUAUCUUAAUGGGCUCUC----UGGCUCCAUCCCAUUAC ...........((((((((((..((((((((.(((((......(((((((..((((.........))))..))))))).)))))...))).)))))..)----.)))))))))....... ( -34.70) >consensus GUGUCGCUAUAGAUGGAGUUGU___UCCUUGUUGGUCU_CCCC__CUCGUUGAUGGUUUGUCCUUCUAUUGAUGAGAUUGAUUAUCUUAAUGGGCUCUC____UGGCUCCAUCCCAUUAC ...........(((((((((......((..........................))...((((.......(((((......))))).....)))).........)))))))))....... (-16.22 = -15.67 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:52 2006