Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,188,885 – 2,188,992 |
Length | 107 |
Max. P | 0.637685 |
Location | 2,188,885 – 2,188,992 |
---|---|
Length | 107 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.90 |
Mean single sequence MFE | -28.17 |
Consensus MFE | -19.36 |
Energy contribution | -19.25 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.09 |
Mean z-score | -2.51 |
Structure conservation index | 0.69 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.637685 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2188885 107 - 22224390 ---------ACACCCAUGUA--CUCGUCUAUAUCGCUGUGAAAA--CGAAAGCGACAGAAGUGGAAAAACAUUGAACCACAUUACUAUAUAUGGAGUGUGGUUGAAAACCGAGUUUCCAA ---------.......((.(--(((((((((.(((((((....)--)...))))).....)))))......((.(((((((((.(((....)))))))))))).))...)))))...)). ( -26.60) >DroSec_CAF1 1912 109 - 1 ---------ACACCCAUGUACACUCGUCUAUAUCGCUGUGAAAA--CGAAAGCGACAGAAGUGGAAAAACAUUGAACCACAUUACUAUAUAUAGCGUGUGGUUGGAAACCGAGUUUCCAA ---------...........(((.((.((((((((((((....)--)...))))).....((((............)))).........))))))).))).((((((((...)))))))) ( -27.00) >DroEre_CAF1 1905 115 - 1 ACAUACAACACAGCCAUGUA--CUCG--UAUAUCGCUGUGAAAAACCGAAAGCGACAGAAGUGGAAAAACAUUGAACCACAU-ACUAUAUAUAGAGUGUGGCUGGAAACCGAGUUUCCAA ........((((((.(((((--....--))))).)))))).....((....).).....((((......))))...((((((-.(((....))).)))))).(((((((...))))))). ( -30.90) >consensus _________ACACCCAUGUA__CUCGUCUAUAUCGCUGUGAAAA__CGAAAGCGACAGAAGUGGAAAAACAUUGAACCACAUUACUAUAUAUAGAGUGUGGUUGGAAACCGAGUUUCCAA ................................(((((.............)))))......((((((....((.(((((((...(((....)))..))))))).)).......)))))). (-19.36 = -19.25 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:49 2006