| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,620,147 – 19,620,256 |
| Length | 109 |
| Max. P | 0.939395 |
| Location | 19,620,147 – 19,620,256 |
|---|---|
| Length | 109 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.06 |
| Mean single sequence MFE | -33.10 |
| Consensus MFE | -24.47 |
| Energy contribution | -23.26 |
| Covariance contribution | -1.21 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.74 |
| SVM decision value | 1.30 |
| SVM RNA-class probability | 0.939395 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19620147 109 - 22224390 GUCAACUGUUGCGUGCCCAUAAAUGCGCCAUAAAAUGGGCUAAUCCCAUUGCAGUCGACUGCAUCAGCUGCAACAGUUGCAUCAGCUUUUGCAGCAAUGCUCUCCCCUC----------- (((.(((((((.((((........))))))...((((((.....))))))))))).))).((((..(((((((.(((((...))))).))))))).)))).........----------- ( -38.10) >DroPse_CAF1 28850 119 - 1 AGCAACUGUUGCGUGUCCAUAAAUGCGCCAUAAAACGGUCUAAUCCCAUACCAGAC-ACUAAGCCGGCUGCAGCGGUUGCAUCAGCUGUUGCGCCAAAGCUCUCUCUCCCUCUCUCUCAU (((.((((((((((((......)))))).....)))))).................-........(((.((((((((((...)))))))))))))...)))................... ( -29.70) >DroPer_CAF1 29891 119 - 1 AGCAACUGUUGCGUGUCCAUAAAUGCGCCAUAAAACGGUCUAAUCCCAUAGCAGAC-ACUAAGCCGGCUGCAGCGGUUGCAUCAGCUGUUGCGCCAAAGCUCUCUCUCCCUCUCUCUCAU (((..(((((((((((......))))))........((......))...)))))..-........(((.((((((((((...)))))))))))))...)))................... ( -31.50) >consensus AGCAACUGUUGCGUGUCCAUAAAUGCGCCAUAAAACGGUCUAAUCCCAUAGCAGAC_ACUAAGCCGGCUGCAGCGGUUGCAUCAGCUGUUGCGCCAAAGCUCUCUCUCCCUCUCUCUCAU .(((((((((((((((........)))).......(((..((.................))..)))...)))))))))))....((....))............................ (-24.47 = -23.26 + -1.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:50 2006