Locus 7878

Sequence ID X_DroMel_CAF1
Location 19,616,147 – 19,616,267
Length 120
Max. P 0.785566
window12926

overview

Window 6

Location 19,616,147 – 19,616,267
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 81.45
Mean single sequence MFE -42.97
Consensus MFE -33.79
Energy contribution -33.24
Covariance contribution -0.55
Combinations/Pair 1.10
Mean z-score -1.75
Structure conservation index 0.79
SVM decision value 0.57
SVM RNA-class probability 0.785566
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19616147 120 + 22224390
CACUGUCUGUAGCACUGCUGGAGGCGAGCGCCUCUGCCGCGUGCAGGGGCGGCAUCUCGGUCUUAAUGCUCGUCAUGGACCGCUACAUAAGUCGAUGCUUGGUGGCUGCUCGGUGUUUCG
((((((((.((((...)))).))))((((((((((((.....))))))))........(((((..(((.....))))))))(((((.(((((....)))))))))).))))))))..... ( -49.30)
>DroPse_CAF1 25065 105 + 1
CGCUGUCUGUGGCACUGCUUGAGGCCAGAGCCUCUGCCGCAUGCAGUGGCGGCAUUUCACUUUUUAUGCUCGCCAUGUACCGCUACAUAAGUCAA---------------CGGCGUAUCG
((((((.(((((((((((.((.(((.((.....))))).)).)))))((((((((..........)))).)))).......)))))).......)---------------)))))..... ( -39.80)
>DroPer_CAF1 26045 105 + 1
CGCUGUCUGUGGCACUGCUUGAGGCCAGAGCCUCUGCCGCAUGCAGUGGCGGCAUUUCACUUUUUAUGCUCGCCAUGUACCGCUACAUAAGUCAA---------------CGGCGUAUCG
((((((.(((((((((((.((.(((.((.....))))).)).)))))((((((((..........)))).)))).......)))))).......)---------------)))))..... ( -39.80)
>consensus
CGCUGUCUGUGGCACUGCUUGAGGCCAGAGCCUCUGCCGCAUGCAGUGGCGGCAUUUCACUUUUUAUGCUCGCCAUGUACCGCUACAUAAGUCAA_______________CGGCGUAUCG
(((((..((((((.((((.((.(((.((.....))))).)).)))).((((((((..........)))).)))).......)))))).......................)))))..... (-33.79 = -33.24 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:49 2006