Locus 7876

Sequence ID X_DroMel_CAF1
Location 19,612,825 – 19,612,944
Length 119
Max. P 0.849405
window12922

overview

Window 2

Location 19,612,825 – 19,612,944
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 95.30
Mean single sequence MFE -47.26
Consensus MFE -44.02
Energy contribution -44.02
Covariance contribution -0.00
Combinations/Pair 1.06
Mean z-score -1.29
Structure conservation index 0.93
SVM decision value 0.78
SVM RNA-class probability 0.849405
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19612825 119 + 22224390
-GGGCCACUACCAAUAAUAGUGUGAUAGCUCAUUGUGGGGUCCAGCGGCUGCAGCUGCUGGUAGCAUUGCGGCGGCGGCGGCAUGAUGGGCAUGUGCAUGGUGGGCGGCAUGGGCAUGGU
-..(((((((.......))))(((...((((((..((..(((((...(((((.(((((((.........))))))).)))))....))))).....))..))))))..))).)))..... ( -49.00)
>DroPse_CAF1 21496 117 + 1
-GG--AACUACCAAUAAUAGUGUGAUAGCUCGUUGUGGGAUCCAGCGGCUGCAGCUGCUGGUAGCAUGGCGGCGGCGGCGGCAUGAUGGGCAUGUGCAUGGUGUGCGGCAUGGGCAUGGU
-..--....(((...............((((((..(((...)).((.(((((.(((((((......))))))).))))).)))..))))))((((.((((.(....).)))).))))))) ( -45.00)
>DroSec_CAF1 18703 119 + 1
-GGGCCACUACCAAUAAUAGUGUGAUAGCUCAUUGUGGGGUCCAGCGGCUGCAGCUGCUGGUAGCAUUGCGGCGGCGGCGGCAUGAUGGGCAUGUGCAUGGUGGGCGGCAUGGGCAUGGU
-..(((((((.......))))(((...((((((..((..(((((...(((((.(((((((.........))))))).)))))....))))).....))..))))))..))).)))..... ( -49.00)
>DroAna_CAF1 19957 120 + 1
GGCCCCACUACCAAUAAUAGUGUGAUAGCUCAUUGUGGGAUCCAGCGGCUGCAGCUGUUGGUAGCAUGGCGGCGGCGGCGGCAUGAUGGGCAUGUGCAUGGUGGGCGGCAUGGGCAUGGU
.(((((((((.......)))))((...((((((..((.(.((((...(((((.(((((((.(.....).))))))).)))))....))))....).))..))))))..)).))))..... ( -48.30)
>DroPer_CAF1 22409 117 + 1
-GG--AACUACCAAUAAUAGUGUGAUAGCUCGUUGUGGGAUCCAGCGGCUGCAGCUGCUGGUAGCAUGGCGGCGGCGGCGGCAUGAUGGGCAUGUGCAUGGUGUGCGGCAUGGGCAUGGU
-..--....(((...............((((((..(((...)).((.(((((.(((((((......))))))).))))).)))..))))))((((.((((.(....).)))).))))))) ( -45.00)
>consensus
_GG_CCACUACCAAUAAUAGUGUGAUAGCUCAUUGUGGGAUCCAGCGGCUGCAGCUGCUGGUAGCAUGGCGGCGGCGGCGGCAUGAUGGGCAUGUGCAUGGUGGGCGGCAUGGGCAUGGU
.........(((...............((((((..(((...)).((.(((((.(((((((......))))))).))))).)))..))))))((((.((((.(....).)))).))))))) (-44.02 = -44.02 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:45 2006