| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,611,123 – 19,611,217 |
| Length | 94 |
| Max. P | 0.814460 |
| Location | 19,611,123 – 19,611,217 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 63.47 |
| Mean single sequence MFE | -26.63 |
| Consensus MFE | -10.62 |
| Energy contribution | -11.51 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.42 |
| Structure conservation index | 0.40 |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.814460 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19611123 94 - 22224390 GUUUUAACGAG--------------------UUUCGCCC---GUGCUCGUUAAGAAA--AACACACUUUGUUGCUUGGCAGGCAAUAAUUCGCUGUUUUUGCCGUUUCC-CUUGUUAAAU ..(((((((((--------------------........---......((((((...--((((.....)))).)))))).(((((.(((.....))).)))))......-))))))))). ( -22.80) >DroSec_CAF1 16921 96 - 1 GUUUUAACGAG--------------------UUUCGCCC---UUGCUCGUUAAGAAAAAAACACACUUUGUUGCUUGGCAGGCAAUAAUUCGCUGUUUUAGCCGUUUCA-CUCGUUAAAU ..(((((((((--------------------(...((..---((((..((((((.....((((.....)))).))))))..))))......((((...)))).))...)-))))))))). ( -24.60) >DroAna_CAF1 18186 113 - 1 C-CUUAACGACCGUUAUACAUUACUUUUGACUUUUGAUUGAGGAGCGAAUUAAGAA---AACACGCUUUGUUGCUCGGCAGGCAACAACUCGCUGUUUUUU-UUUCGCAAAUCCCACU-- (-((((((((..((((...........))))..))).)))))).(((((..(((((---((((((..((((((((.....))))))))..)).))))))))-))))))..........-- ( -32.50) >consensus GUUUUAACGAG____________________UUUCGCCC___GUGCUCGUUAAGAAA__AACACACUUUGUUGCUUGGCAGGCAAUAAUUCGCUGUUUUUGCCGUUUCA_CUCGUUAAAU ..(((((((((..................................))))))))).....(((((...((((((((.....))))))))...).))))....................... (-10.62 = -11.51 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:40 2006