Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,607,894 – 19,607,992 |
Length | 98 |
Max. P | 0.717073 |
Location | 19,607,894 – 19,607,992 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.49 |
Mean single sequence MFE | -23.88 |
Consensus MFE | -14.48 |
Energy contribution | -14.64 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.06 |
Mean z-score | -1.68 |
Structure conservation index | 0.61 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.717073 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19607894 98 + 22224390 GAU------CUACUGUCUUUCGAGGGUACGAAUGUAUCUACAAGAUACACAC--GCACACACCGGGACA------AACGGACACGA-----AGGUAGACAAUUUCUACCUGGAUA---CC .((------((.((((.(..((..(((.((..((((((.....))))))..)--).)).)..))..)..------.))))......-----(((((((.....))))))))))).---.. ( -26.90) >DroPse_CAF1 15953 106 + 1 GAU------CUACUGUCUUUUCAAGG--------UAUCUACAAGAUACACACAGGCACACACUCGCACACGGAUGCACGGAUACGAAACAGAGGUAGACAAUUUCUACCUGGACAACAAC ...------....(((((((((...(--------((((.....)))))......(((..(..........)..)))........))))...(((((((.....))))))))))))..... ( -21.90) >DroSec_CAF1 13722 98 + 1 GAU------CUACUGUCUUUCGAGGGUACGAAUGUAUCUACAAGAUACACAC--GCACACACUGGGACA------AACGGACACGA-----AGGUAGACAAUUUCUACCUGGAUA---CC .((------((..((((((((.((.((.((..((((((.....))))))..)--).))...)).)))..------...)))))...-----(((((((.....))))))))))).---.. ( -26.60) >DroAna_CAF1 16171 105 + 1 GAUCGACCCCUACUGUCUUUCCUUGGUAU--CUGUAUCUACAAGAUACACAC--ACUCGCACUCGCACA------CAU--CCACGAAAUUGAGGUAGACAAUUUCUACCUGGACA---AA .............((((((((..(((...--.((((((.....))))))...--....((....))...------...--))).)))....(((((((.....))))))))))))---.. ( -21.90) >DroPer_CAF1 16773 106 + 1 GAU------CUACUGUCUUUUCAAGG--------UAUCUACAAGAUACACACAAGCACACACUCGCACACGGAUGCACGGAUACGAAACAGAGGUAGACAAUUUCUACCUGGACAACAAC ...------....(((((((((...(--------((((.....)))))......(((..(..........)..)))........))))...(((((((.....))))))))))))..... ( -22.10) >consensus GAU______CUACUGUCUUUCCAAGGUA____UGUAUCUACAAGAUACACAC__GCACACACUCGCACA______CACGGACACGAAA__GAGGUAGACAAUUUCUACCUGGACA___AC .............(((((...............(((((.....)))))...........................................(((((((.....))))))))))))..... (-14.48 = -14.64 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:38 2006