Locus 7871

Sequence ID X_DroMel_CAF1
Location 19,603,641 – 19,603,738
Length 97
Max. P 0.518628
window12913

overview

Window 3

Location 19,603,641 – 19,603,738
Length 97
Sequences 3
Columns 103
Reading direction forward
Mean pairwise identity 84.87
Mean single sequence MFE -22.40
Consensus MFE -20.65
Energy contribution -20.43
Covariance contribution -0.22
Combinations/Pair 1.04
Mean z-score -0.79
Structure conservation index 0.92
SVM decision value -0.03
SVM RNA-class probability 0.518628
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19603641 97 + 22224390
-----UCUUCUGUAUCGAAUGAGAUCUGGGAUCG-GGGCUUCGGUGUAAGGCUUCAUAUAAAGGAAUCACAUCGAACUCAAAUUCAAUAAAUCUCUAAUCCAA
-----...............(((((...((((..-(((.((((((((..(..(((.......)))..))))))))))))..)))).....)))))........ ( -20.40)
>DroSec_CAF1 9694 103 + 1
GUAUCUCCUCCGCAUCGAACGAGAUCGGGGAACGGGGGCUUCGGUGUAAGGCUUGCUAUAAAGGAAUCACAUCGAACUCAAAUCCAAUAAAUCUCUAAUCCAA
.....(((.(((.(((......)))))))))....(((.((((((((.(..(((.......)))..).)))))))))))........................ ( -23.80)
>DroSim_CAF1 9914 90 + 1
-------------AUCGAACGAGAUCGGGGAGUGGGGGCUUCGGUGUAAGGCUUGCUAUAAAGGAAUCACAUCGAACUCAAAUCCAAUAAAUCUCUAAUCCAA
-------------.......(((((...(((....(((.((((((((.(..(((.......)))..).)))))))))))...))).....)))))........ ( -23.00)
>consensus
_____UC_UC_G_AUCGAACGAGAUCGGGGAACGGGGGCUUCGGUGUAAGGCUUGCUAUAAAGGAAUCACAUCGAACUCAAAUCCAAUAAAUCUCUAAUCCAA
....................(((((...(((....(((.((((((((.(..(((.......)))..).)))))))))))...))).....)))))........ (-20.65 = -20.43 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:37 2006