| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,602,854 – 19,602,968 |
| Length | 114 |
| Max. P | 0.972443 |
| Location | 19,602,854 – 19,602,968 |
|---|---|
| Length | 114 |
| Sequences | 3 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 88.41 |
| Mean single sequence MFE | -32.40 |
| Consensus MFE | -29.34 |
| Energy contribution | -29.23 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.71 |
| Structure conservation index | 0.91 |
| SVM decision value | 1.69 |
| SVM RNA-class probability | 0.972443 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19602854 114 + 22224390 UUUUAGUCCUUGAACCUUUCUGGCGCCUAUGUAUGUACAGCUUAACGGUUGCAAUUGCAUUUGUAUGUGGAUUUGUGGCUAGGAGCGUAAGUGGGUAAGUGGGCUAAAAGUACG (((((((((.....((.....)).((((((.....(((.((((...(((..(((.(.(((......))).).)))..)))..))))))).))))))....)))))))))..... ( -35.00) >DroSec_CAF1 8921 100 + 1 UUUUAGUCCUUGAUCCUU-----------UGUAUGUACAGUUUAAUGGUUGCAAUUGCAUUUGUGUGUGGAUUUGUGGCUAGGAGCGU---UGGGUGAGUGGGCUAAAAGUACG (((((((((((.((((..-----------(((....)))((((..((((..((((..(((....)))..)..)))..)))).))))..---.)))).)).)))))))))..... ( -29.90) >DroSim_CAF1 9032 100 + 1 UUUUAGUCCUUGAUCCUU-----------UGUAUGUACAGCUUAAUGGUUGCAAUUGCAUUUGUGUGUGGAUUUGUGGCUAGGAGCGU---UGGGUGAGUGGGCUAAAAGUACG (((((((((((.((((..-----------(((....)))((((..((((..((((..(((....)))..)..)))..)))).))))..---.)))).)).)))))))))..... ( -32.30) >consensus UUUUAGUCCUUGAUCCUU___________UGUAUGUACAGCUUAAUGGUUGCAAUUGCAUUUGUGUGUGGAUUUGUGGCUAGGAGCGU___UGGGUGAGUGGGCUAAAAGUACG (((((((((((.((((.............(((....)))((((...(((..((((..(((....)))..)..)))..)))..))))......)))).)).)))))))))..... (-29.34 = -29.23 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:36 2006