Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,188,716 – 2,188,833 |
Length | 117 |
Max. P | 0.942746 |
Location | 2,188,716 – 2,188,833 |
---|---|
Length | 117 |
Sequences | 3 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 79.77 |
Mean single sequence MFE | -27.18 |
Consensus MFE | -23.59 |
Energy contribution | -24.03 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.04 |
Mean z-score | -1.66 |
Structure conservation index | 0.87 |
SVM decision value | 1.33 |
SVM RNA-class probability | 0.942746 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2188716 117 - 22224390 CCACAUGGGGCAUAUGCCCCACGAACACCCAAUCCCGCUCCAUCCCCCUUUCAUUCGAGUCACUACGACUUUCUGAUUGUGUAUAAAAAGAACUCAUGUUCCAAAUGAUAAGUGGGG ...(.((((((....)))))).)..........((((((..(((...(..(((...(((((.....)))))..)))..)..........((((....)))).....))).)))))). ( -31.00) >DroSec_CAF1 1754 112 - 1 CCACAUGGGGAAUAUGCCCCACGAACACCCAAUCCGCCG-----CCCCUUCCAUUCGAGUCACUACGACUUUCUGAUUGUGUAUAAAAAGAACUCAUGUUCCAAAUGAUAAGUGGGG ((((.(((((......))))).....((.(((((.....-----............(((((.....)))))...))))).)).......((((....))))..........)))).. ( -22.55) >DroEre_CAF1 1737 88 - 1 CCACAUGGGGCAUAUGCCCCACGACCA-----------------------------GAGUCACUUCGACUCUCUGAUUGUGUAUAAAAAGAACUCAUGUUCCAAAUGAUAAGUGGGG ((((..(((((....)))))((((.((-----------------------------(((((.....)))..)))).)))).........((((....))))..........)))).. ( -28.00) >consensus CCACAUGGGGCAUAUGCCCCACGAACACCCAAUCC__C______CCCCUU_CAUUCGAGUCACUACGACUUUCUGAUUGUGUAUAAAAAGAACUCAUGUUCCAAAUGAUAAGUGGGG ((((.((((((....)))))).(((((.............................(((((.....)))))(((..(((....)))..))).....)))))..........)))).. (-23.59 = -24.03 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:49 2006